Hb_010080_070

Information

Type -
Description -
Location Contig10080: 96069-99502
Sequence    

Annotation

kegg
ID tcc:TCM_034357
description FTSH protease 1 isoform 2
nr
ID XP_012073680.1
description PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
swissprot
ID O82150
description ATP-dependent zinc metalloprotease FTSH, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2
trembl
ID A0A067KL39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08123 PE=3 SV=1
Gene Ontology
ID GO:0016020
description atp-dependent zinc metalloprotease chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00511: 96065-99354
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010080_070 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
2 Hb_156850_020 0.0700566903 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
3 Hb_001517_060 0.0881483221 - - phosphoribulose kinase, putative [Ricinus communis]
4 Hb_000009_470 0.0886625791 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
5 Hb_000992_090 0.0896302575 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
6 Hb_106552_030 0.0898572227 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
7 Hb_000107_540 0.0989021825 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
8 Hb_003905_030 0.1002708725 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_001579_050 0.1022172713 - - alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_002333_040 0.1029791447 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
11 Hb_011900_020 0.1034933186 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
12 Hb_002534_090 0.1040034272 - - geranylgeranyl reductase [Hevea brasiliensis]
13 Hb_007595_020 0.1040772962 - - maturase K [Hevea brasiliensis]
14 Hb_068804_110 0.1047203638 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
15 Hb_028960_010 0.1055274703 - - phosphoglycerate kinase, putative [Ricinus communis]
16 Hb_000081_110 0.1060275025 - - nitrate transporter, putative [Ricinus communis]
17 Hb_001584_050 0.1061432182 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
18 Hb_023344_040 0.1091013418 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001775_100 0.1097483671 - - PREDICTED: probable 2-carboxy-D-arabinitol-1-phosphatase [Jatropha curcas]
20 Hb_002289_070 0.1104913605 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_010080_070 Hb_010080_070 Hb_156850_020 Hb_156850_020 Hb_010080_070--Hb_156850_020 Hb_001517_060 Hb_001517_060 Hb_010080_070--Hb_001517_060 Hb_000009_470 Hb_000009_470 Hb_010080_070--Hb_000009_470 Hb_000992_090 Hb_000992_090 Hb_010080_070--Hb_000992_090 Hb_106552_030 Hb_106552_030 Hb_010080_070--Hb_106552_030 Hb_000107_540 Hb_000107_540 Hb_010080_070--Hb_000107_540 Hb_156850_020--Hb_106552_030 Hb_028960_010 Hb_028960_010 Hb_156850_020--Hb_028960_010 Hb_012940_020 Hb_012940_020 Hb_156850_020--Hb_012940_020 Hb_011900_020 Hb_011900_020 Hb_156850_020--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_156850_020--Hb_000359_070 Hb_009093_020 Hb_009093_020 Hb_001517_060--Hb_009093_020 Hb_002289_070 Hb_002289_070 Hb_001517_060--Hb_002289_070 Hb_002534_090 Hb_002534_090 Hb_001517_060--Hb_002534_090 Hb_001579_050 Hb_001579_050 Hb_001517_060--Hb_001579_050 Hb_000029_390 Hb_000029_390 Hb_001517_060--Hb_000029_390 Hb_001517_060--Hb_000009_470 Hb_011344_030 Hb_011344_030 Hb_000009_470--Hb_011344_030 Hb_004631_020 Hb_004631_020 Hb_000009_470--Hb_004631_020 Hb_000009_470--Hb_002534_090 Hb_007044_020 Hb_007044_020 Hb_000009_470--Hb_007044_020 Hb_004712_230 Hb_004712_230 Hb_000009_470--Hb_004712_230 Hb_023344_040 Hb_023344_040 Hb_000992_090--Hb_023344_040 Hb_001135_170 Hb_001135_170 Hb_000992_090--Hb_001135_170 Hb_000992_090--Hb_011344_030 Hb_000992_090--Hb_000009_470 Hb_000992_090--Hb_000029_390 Hb_000103_240 Hb_000103_240 Hb_000992_090--Hb_000103_240 Hb_106552_030--Hb_000992_090 Hb_106552_030--Hb_012940_020 Hb_068804_110 Hb_068804_110 Hb_106552_030--Hb_068804_110 Hb_000360_010 Hb_000360_010 Hb_106552_030--Hb_000360_010 Hb_001517_010 Hb_001517_010 Hb_000107_540--Hb_001517_010 Hb_002333_040 Hb_002333_040 Hb_000107_540--Hb_002333_040 Hb_001584_050 Hb_001584_050 Hb_000107_540--Hb_001584_050 Hb_005348_120 Hb_005348_120 Hb_000107_540--Hb_005348_120 Hb_000679_320 Hb_000679_320 Hb_000107_540--Hb_000679_320 Hb_004162_250 Hb_004162_250 Hb_000107_540--Hb_004162_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.28634 68.2976 252.12 141.337 9.44029 6.32896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.09573 5.34331 5.47271 28.2482 1133.86

CAGE analysis