Hb_001517_010

Information

Type -
Description -
Location Contig1517: 196-4794
Sequence    

Annotation

kegg
ID rcu:RCOM_1316980
description hypothetical protein
nr
ID XP_002519004.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FVQ4
description Plastidal glycolate/glycerate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=PLGG1 PE=2 SV=1
trembl
ID B9RZ35
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1316980 PE=4 SV=1
Gene Ontology
ID GO:0009706
description plastidal glycolate glycerate translocator chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12873: 196-4752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001517_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001195_290 0.0797325797 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
3 Hb_000107_540 0.0812117588 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
4 Hb_005523_040 0.0824998431 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
5 Hb_134949_010 0.0928292473 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
6 Hb_001584_210 0.0935576276 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
7 Hb_001691_180 0.095452275 - - phosphoglycerate mutase, putative [Ricinus communis]
8 Hb_000679_320 0.0980380738 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
9 Hb_002333_040 0.1015207538 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
10 Hb_004979_050 0.102835289 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
11 Hb_000856_280 0.1034903339 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
12 Hb_005210_010 0.1037118731 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
13 Hb_004162_250 0.1080568145 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
14 Hb_006472_040 0.1094377289 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
15 Hb_005348_120 0.1105691462 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
16 Hb_010080_070 0.1131152849 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
17 Hb_123689_010 0.1157991521 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
18 Hb_000390_160 0.1168577189 - - PREDICTED: adenosine kinase [Jatropha curcas]
19 Hb_003905_030 0.1176932868 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
20 Hb_001268_170 0.1181246834 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001517_010 Hb_001517_010 Hb_001195_290 Hb_001195_290 Hb_001517_010--Hb_001195_290 Hb_000107_540 Hb_000107_540 Hb_001517_010--Hb_000107_540 Hb_005523_040 Hb_005523_040 Hb_001517_010--Hb_005523_040 Hb_134949_010 Hb_134949_010 Hb_001517_010--Hb_134949_010 Hb_001584_210 Hb_001584_210 Hb_001517_010--Hb_001584_210 Hb_001691_180 Hb_001691_180 Hb_001517_010--Hb_001691_180 Hb_006472_040 Hb_006472_040 Hb_001195_290--Hb_006472_040 Hb_008112_020 Hb_008112_020 Hb_001195_290--Hb_008112_020 Hb_005210_010 Hb_005210_010 Hb_001195_290--Hb_005210_010 Hb_001268_170 Hb_001268_170 Hb_001195_290--Hb_001268_170 Hb_001195_290--Hb_134949_010 Hb_002333_040 Hb_002333_040 Hb_000107_540--Hb_002333_040 Hb_001584_050 Hb_001584_050 Hb_000107_540--Hb_001584_050 Hb_005348_120 Hb_005348_120 Hb_000107_540--Hb_005348_120 Hb_000679_320 Hb_000679_320 Hb_000107_540--Hb_000679_320 Hb_004162_250 Hb_004162_250 Hb_000107_540--Hb_004162_250 Hb_005523_040--Hb_005210_010 Hb_074548_010 Hb_074548_010 Hb_005523_040--Hb_074548_010 Hb_000856_280 Hb_000856_280 Hb_005523_040--Hb_000856_280 Hb_005523_040--Hb_005348_120 Hb_005523_040--Hb_001195_290 Hb_002071_030 Hb_002071_030 Hb_134949_010--Hb_002071_030 Hb_000029_330 Hb_000029_330 Hb_134949_010--Hb_000029_330 Hb_000317_180 Hb_000317_180 Hb_134949_010--Hb_000317_180 Hb_009296_030 Hb_009296_030 Hb_134949_010--Hb_009296_030 Hb_011344_030 Hb_011344_030 Hb_001584_210--Hb_011344_030 Hb_002003_130 Hb_002003_130 Hb_001584_210--Hb_002003_130 Hb_001584_210--Hb_002333_040 Hb_007044_270 Hb_007044_270 Hb_001584_210--Hb_007044_270 Hb_001584_210--Hb_001195_290 Hb_000076_070 Hb_000076_070 Hb_001691_180--Hb_000076_070 Hb_123689_010 Hb_123689_010 Hb_001691_180--Hb_123689_010 Hb_009771_080 Hb_009771_080 Hb_001691_180--Hb_009771_080 Hb_001691_180--Hb_000107_540 Hb_028960_010 Hb_028960_010 Hb_001691_180--Hb_028960_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.554985 2.30784 17.6296 8.12931 0.225983 0.208362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00061 0.708465 0.786995 1.57234 47.9688

CAGE analysis