Hb_009771_080

Information

Type -
Description -
Location Contig9771: 83560-87103
Sequence    

Annotation

kegg
ID tcc:TCM_021719
description Leucine-rich repeat protein kinase family protein, putative
nr
ID XP_012087887.1
description PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067JWT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25034 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009771_080 0.0 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
2 Hb_000076_070 0.0674403633 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
3 Hb_163950_040 0.0971625707 - - PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]
4 Hb_001691_180 0.0973089122 - - phosphoglycerate mutase, putative [Ricinus communis]
5 Hb_123689_010 0.1295383328 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
6 Hb_000679_320 0.1297809141 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
7 Hb_001517_010 0.1334835411 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002534_090 0.1341601138 - - geranylgeranyl reductase [Hevea brasiliensis]
9 Hb_000049_330 0.1369217431 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
10 Hb_000107_540 0.1371000667 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
11 Hb_028960_010 0.1388376572 - - phosphoglycerate kinase, putative [Ricinus communis]
12 Hb_000009_470 0.1389291751 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
13 Hb_001579_050 0.139890029 - - alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_029622_060 0.1402565436 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
15 Hb_002413_050 0.141579347 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
16 Hb_075050_010 0.1433373698 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_001269_480 0.143534446 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
18 Hb_004631_020 0.1436328611 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
19 Hb_001517_060 0.1444083224 - - phosphoribulose kinase, putative [Ricinus communis]
20 Hb_000906_080 0.1460471579 - - short chain alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009771_080 Hb_009771_080 Hb_000076_070 Hb_000076_070 Hb_009771_080--Hb_000076_070 Hb_163950_040 Hb_163950_040 Hb_009771_080--Hb_163950_040 Hb_001691_180 Hb_001691_180 Hb_009771_080--Hb_001691_180 Hb_123689_010 Hb_123689_010 Hb_009771_080--Hb_123689_010 Hb_000679_320 Hb_000679_320 Hb_009771_080--Hb_000679_320 Hb_001517_010 Hb_001517_010 Hb_009771_080--Hb_001517_010 Hb_000076_070--Hb_001691_180 Hb_000076_070--Hb_123689_010 Hb_029622_060 Hb_029622_060 Hb_000076_070--Hb_029622_060 Hb_007044_020 Hb_007044_020 Hb_000076_070--Hb_007044_020 Hb_000221_130 Hb_000221_130 Hb_000076_070--Hb_000221_130 Hb_000081_110 Hb_000081_110 Hb_163950_040--Hb_000081_110 Hb_163950_040--Hb_000679_320 Hb_001579_050 Hb_001579_050 Hb_163950_040--Hb_001579_050 Hb_000139_030 Hb_000139_030 Hb_163950_040--Hb_000139_030 Hb_048755_030 Hb_048755_030 Hb_163950_040--Hb_048755_030 Hb_001691_180--Hb_001517_010 Hb_001691_180--Hb_123689_010 Hb_000107_540 Hb_000107_540 Hb_001691_180--Hb_000107_540 Hb_028960_010 Hb_028960_010 Hb_001691_180--Hb_028960_010 Hb_123689_010--Hb_029622_060 Hb_002534_090 Hb_002534_090 Hb_123689_010--Hb_002534_090 Hb_000009_470 Hb_000009_470 Hb_123689_010--Hb_000009_470 Hb_011344_030 Hb_011344_030 Hb_123689_010--Hb_011344_030 Hb_123689_010--Hb_007044_020 Hb_001269_480 Hb_001269_480 Hb_123689_010--Hb_001269_480 Hb_004979_050 Hb_004979_050 Hb_000679_320--Hb_004979_050 Hb_009393_140 Hb_009393_140 Hb_000679_320--Hb_009393_140 Hb_006472_040 Hb_006472_040 Hb_000679_320--Hb_006472_040 Hb_000359_160 Hb_000359_160 Hb_000679_320--Hb_000359_160 Hb_000679_320--Hb_000107_540 Hb_008112_020 Hb_008112_020 Hb_000679_320--Hb_008112_020 Hb_001195_290 Hb_001195_290 Hb_001517_010--Hb_001195_290 Hb_001517_010--Hb_000107_540 Hb_005523_040 Hb_005523_040 Hb_001517_010--Hb_005523_040 Hb_134949_010 Hb_134949_010 Hb_001517_010--Hb_134949_010 Hb_001584_210 Hb_001584_210 Hb_001517_010--Hb_001584_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00980277 0.109502 0.0721029 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0135048 0.0106274 0 0.0126406 0.431332

CAGE analysis