Hb_163950_040

Information

Type -
Description -
Location Contig163950: 31613-33792
Sequence    

Annotation

kegg
ID rcu:RCOM_1497080
description dihydrodipicolinate reductase, putative (EC:1.3.1.26)
nr
ID XP_012090310.1
description PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]
swissprot
ID Q9FJ82
description Putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=DAPB3 PE=2 SV=1
trembl
ID A0A067JHR3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26154 PE=4 SV=1
Gene Ontology
ID GO:0009570
description 4-hydroxy-tetrahydrodipicolinate reductase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15041: 31329-33805
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163950_040 0.0 - - PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]
2 Hb_009771_080 0.0971625707 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_000081_110 0.0980250405 - - nitrate transporter, putative [Ricinus communis]
4 Hb_000679_320 0.0985185121 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
5 Hb_001579_050 0.1005908214 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_000139_030 0.1011197272 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
7 Hb_048755_030 0.1092181429 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_000107_540 0.1116486104 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
9 Hb_010080_070 0.1140563726 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
10 Hb_000462_160 0.118181026 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_020367_040 0.1194994206 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
12 Hb_001691_180 0.1203219789 - - phosphoglycerate mutase, putative [Ricinus communis]
13 Hb_002534_090 0.12115853 - - geranylgeranyl reductase [Hevea brasiliensis]
14 Hb_000482_180 0.1218937909 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
15 Hb_001517_060 0.1235726707 - - phosphoribulose kinase, putative [Ricinus communis]
16 Hb_002111_010 0.1256433495 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
17 Hb_006915_010 0.1311152033 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
18 Hb_000076_070 0.1313160666 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
19 Hb_002413_050 0.1319909033 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
20 Hb_156850_020 0.1328532517 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]

Gene co-expression network

sample Hb_163950_040 Hb_163950_040 Hb_009771_080 Hb_009771_080 Hb_163950_040--Hb_009771_080 Hb_000081_110 Hb_000081_110 Hb_163950_040--Hb_000081_110 Hb_000679_320 Hb_000679_320 Hb_163950_040--Hb_000679_320 Hb_001579_050 Hb_001579_050 Hb_163950_040--Hb_001579_050 Hb_000139_030 Hb_000139_030 Hb_163950_040--Hb_000139_030 Hb_048755_030 Hb_048755_030 Hb_163950_040--Hb_048755_030 Hb_000076_070 Hb_000076_070 Hb_009771_080--Hb_000076_070 Hb_001691_180 Hb_001691_180 Hb_009771_080--Hb_001691_180 Hb_123689_010 Hb_123689_010 Hb_009771_080--Hb_123689_010 Hb_009771_080--Hb_000679_320 Hb_001517_010 Hb_001517_010 Hb_009771_080--Hb_001517_010 Hb_000483_440 Hb_000483_440 Hb_000081_110--Hb_000483_440 Hb_001517_060 Hb_001517_060 Hb_000081_110--Hb_001517_060 Hb_007426_070 Hb_007426_070 Hb_000081_110--Hb_007426_070 Hb_000081_110--Hb_000139_030 Hb_000081_110--Hb_001579_050 Hb_000017_210 Hb_000017_210 Hb_000081_110--Hb_000017_210 Hb_004979_050 Hb_004979_050 Hb_000679_320--Hb_004979_050 Hb_009393_140 Hb_009393_140 Hb_000679_320--Hb_009393_140 Hb_006472_040 Hb_006472_040 Hb_000679_320--Hb_006472_040 Hb_000359_160 Hb_000359_160 Hb_000679_320--Hb_000359_160 Hb_000107_540 Hb_000107_540 Hb_000679_320--Hb_000107_540 Hb_008112_020 Hb_008112_020 Hb_000679_320--Hb_008112_020 Hb_001579_050--Hb_001517_060 Hb_015807_020 Hb_015807_020 Hb_001579_050--Hb_015807_020 Hb_001289_050 Hb_001289_050 Hb_001579_050--Hb_001289_050 Hb_001579_050--Hb_000139_030 Hb_002534_090 Hb_002534_090 Hb_001579_050--Hb_002534_090 Hb_057880_020 Hb_057880_020 Hb_000139_030--Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_000139_030--Hb_000462_160 Hb_020367_040 Hb_020367_040 Hb_000139_030--Hb_020367_040 Hb_000139_030--Hb_048755_030 Hb_000482_180 Hb_000482_180 Hb_048755_030--Hb_000482_180 Hb_011537_130 Hb_011537_130 Hb_048755_030--Hb_011537_130 Hb_048755_030--Hb_001579_050 Hb_002111_010 Hb_002111_010 Hb_048755_030--Hb_002111_010 Hb_048755_030--Hb_020367_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.67377 2.35399 1.94789 0 0.025031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.206564 0.121844 0 0.57187 10.9556

CAGE analysis