Hb_006472_040

Information

Type -
Description -
Location Contig6472: 43558-52478
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24450g
description POPTRDRAFT_706185; Inner membrane protein ALBINO3
nr
ID XP_012065013.1
description PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
swissprot
ID Q9FY06
description Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2
trembl
ID A0A067LJ12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05686 PE=3 SV=1
Gene Ontology
ID GO:0009534
description inner membrane protein ppf- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52374: 43571-50965 , PASA_asmbl_52376: 49829-50104 , PASA_asmbl_52378: 52120-52436 , PASA_asmbl_52380: 51233-52329
cDNA
(Sanger)
(ID:Location)		 028_N16.ab1: 43571-44463

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006472_040 0.0 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
2 Hb_008112_020 0.0618044682 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
3 Hb_001195_290 0.0705408628 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
4 Hb_000679_320 0.091922523 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
5 Hb_169383_010 0.0979758056 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
6 Hb_000317_180 0.1011230647 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
7 Hb_009393_140 0.1063067837 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
8 Hb_004979_050 0.1069921723 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
9 Hb_004096_210 0.1071991424 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
10 Hb_022693_010 0.1084494214 - - pectin acetylesterase, putative [Ricinus communis]
11 Hb_001517_010 0.1094377289 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000618_110 0.1103021047 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
13 Hb_134949_010 0.1131161711 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
14 Hb_000856_280 0.1131657906 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
15 Hb_001691_180 0.1139828092 - - phosphoglycerate mutase, putative [Ricinus communis]
16 Hb_002477_020 0.1146262854 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
17 Hb_009296_030 0.1157372962 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
18 Hb_005348_120 0.1190627193 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
19 Hb_022137_050 0.1196801136 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
20 Hb_000590_110 0.1228905874 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006472_040 Hb_006472_040 Hb_008112_020 Hb_008112_020 Hb_006472_040--Hb_008112_020 Hb_001195_290 Hb_001195_290 Hb_006472_040--Hb_001195_290 Hb_000679_320 Hb_000679_320 Hb_006472_040--Hb_000679_320 Hb_169383_010 Hb_169383_010 Hb_006472_040--Hb_169383_010 Hb_000317_180 Hb_000317_180 Hb_006472_040--Hb_000317_180 Hb_009393_140 Hb_009393_140 Hb_006472_040--Hb_009393_140 Hb_008112_020--Hb_001195_290 Hb_022693_010 Hb_022693_010 Hb_008112_020--Hb_022693_010 Hb_004979_050 Hb_004979_050 Hb_008112_020--Hb_004979_050 Hb_008112_020--Hb_000679_320 Hb_008112_020--Hb_169383_010 Hb_001517_010 Hb_001517_010 Hb_001195_290--Hb_001517_010 Hb_005210_010 Hb_005210_010 Hb_001195_290--Hb_005210_010 Hb_001268_170 Hb_001268_170 Hb_001195_290--Hb_001268_170 Hb_134949_010 Hb_134949_010 Hb_001195_290--Hb_134949_010 Hb_000679_320--Hb_004979_050 Hb_000679_320--Hb_009393_140 Hb_000359_160 Hb_000359_160 Hb_000679_320--Hb_000359_160 Hb_000107_540 Hb_000107_540 Hb_000679_320--Hb_000107_540 Hb_004096_210 Hb_004096_210 Hb_169383_010--Hb_004096_210 Hb_169383_010--Hb_001195_290 Hb_019654_180 Hb_019654_180 Hb_169383_010--Hb_019654_180 Hb_000618_110 Hb_000618_110 Hb_169383_010--Hb_000618_110 Hb_002477_020 Hb_002477_020 Hb_000317_180--Hb_002477_020 Hb_000089_140 Hb_000089_140 Hb_000317_180--Hb_000089_140 Hb_000029_330 Hb_000029_330 Hb_000317_180--Hb_000029_330 Hb_000803_170 Hb_000803_170 Hb_000317_180--Hb_000803_170 Hb_009296_030 Hb_009296_030 Hb_000317_180--Hb_009296_030 Hb_001266_160 Hb_001266_160 Hb_000317_180--Hb_001266_160 Hb_000252_180 Hb_000252_180 Hb_009393_140--Hb_000252_180 Hb_009393_140--Hb_000359_160 Hb_009393_140--Hb_004979_050 Hb_022693_020 Hb_022693_020 Hb_009393_140--Hb_022693_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.713983 3.81832 39.0392 32.6949 1.02323 2.38855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.71561 1.79487 1.91426 4.60942 101.65

CAGE analysis