Hb_004096_210

Information

Type -
Description -
Location Contig4096: 194131-198296
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13870g
description hypothetical protein
nr
ID XP_012077945.1
description PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
swissprot
ID P54493
description Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP PE=1 SV=2
trembl
ID A0A067KKY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12966 PE=4 SV=1
Gene Ontology
ID GO:0016021
description rhomboid-related intramembrane serine protease family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40437: 194240-196772 , PASA_asmbl_40438: 194240-198274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_210 0.0 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
2 Hb_000618_110 0.0520042098 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
3 Hb_009838_070 0.0910562287 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
4 Hb_009393_130 0.0941332696 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
5 Hb_000327_260 0.0943433134 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000866_020 0.0955297964 - - hypothetical protein B456_004G042000 [Gossypium raimondii]
7 Hb_000816_240 0.1003535075 - - PREDICTED: phosphoglucan phosphatase LSF2, chloroplastic [Jatropha curcas]
8 Hb_169383_010 0.1028276805 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
9 Hb_004650_050 0.1067361148 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
10 Hb_006472_040 0.1071991424 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
11 Hb_000847_030 0.1091041247 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
12 Hb_091433_050 0.1118608005 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
13 Hb_022693_010 0.1175081309 - - pectin acetylesterase, putative [Ricinus communis]
14 Hb_003018_150 0.1184495002 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
15 Hb_000140_460 0.1189012336 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
16 Hb_000711_030 0.1192290705 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
17 Hb_000352_280 0.1192883564 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
18 Hb_000190_230 0.1205034133 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
19 Hb_000948_120 0.1205845693 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
20 Hb_022137_050 0.1231135686 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004096_210 Hb_004096_210 Hb_000618_110 Hb_000618_110 Hb_004096_210--Hb_000618_110 Hb_009838_070 Hb_009838_070 Hb_004096_210--Hb_009838_070 Hb_009393_130 Hb_009393_130 Hb_004096_210--Hb_009393_130 Hb_000327_260 Hb_000327_260 Hb_004096_210--Hb_000327_260 Hb_000866_020 Hb_000866_020 Hb_004096_210--Hb_000866_020 Hb_000816_240 Hb_000816_240 Hb_004096_210--Hb_000816_240 Hb_000847_030 Hb_000847_030 Hb_000618_110--Hb_000847_030 Hb_000140_460 Hb_000140_460 Hb_000618_110--Hb_000140_460 Hb_006970_030 Hb_006970_030 Hb_000618_110--Hb_006970_030 Hb_000618_110--Hb_000866_020 Hb_000618_110--Hb_009393_130 Hb_004650_050 Hb_004650_050 Hb_009838_070--Hb_004650_050 Hb_009838_070--Hb_000327_260 Hb_009838_070--Hb_009393_130 Hb_003680_060 Hb_003680_060 Hb_009838_070--Hb_003680_060 Hb_000711_030 Hb_000711_030 Hb_009838_070--Hb_000711_030 Hb_009393_130--Hb_003680_060 Hb_007803_040 Hb_007803_040 Hb_009393_130--Hb_007803_040 Hb_003605_060 Hb_003605_060 Hb_009393_130--Hb_003605_060 Hb_010557_010 Hb_010557_010 Hb_009393_130--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_009393_130--Hb_002811_250 Hb_000539_040 Hb_000539_040 Hb_000327_260--Hb_000539_040 Hb_000327_260--Hb_009393_130 Hb_000116_220 Hb_000116_220 Hb_000327_260--Hb_000116_220 Hb_000832_270 Hb_000832_270 Hb_000327_260--Hb_000832_270 Hb_003177_050 Hb_003177_050 Hb_000866_020--Hb_003177_050 Hb_000866_020--Hb_000327_260 Hb_000352_280 Hb_000352_280 Hb_000866_020--Hb_000352_280 Hb_074197_030 Hb_074197_030 Hb_000866_020--Hb_074197_030 Hb_137222_010 Hb_137222_010 Hb_000816_240--Hb_137222_010 Hb_005725_240 Hb_005725_240 Hb_000816_240--Hb_005725_240 Hb_000976_400 Hb_000976_400 Hb_000816_240--Hb_000976_400 Hb_069696_020 Hb_069696_020 Hb_000816_240--Hb_069696_020 Hb_006075_030 Hb_006075_030 Hb_000816_240--Hb_006075_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.190915 1.79709 15.0336 12.0014 0.178426 0.876835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.580923 0.768694 0.274644 1.82933 24.0836

CAGE analysis