Hb_000029_330

Information

Type -
Description -
Location Contig29: 287770-301848
Sequence    

Annotation

kegg
ID rcu:RCOM_0938320
description NAD dependent epimerase/dehydratase, putative
nr
ID XP_012069465.1
description PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
swissprot
ID Q8SKU2
description Protein TIC 62, chloroplastic OS=Pisum sativum GN=TIC62 PE=1 SV=2
trembl
ID B9RZD4
description NAD dependent epimerase/dehydratase, putative OS=Ricinus communis GN=RCOM_0938320 PE=4 SV=1
Gene Ontology
ID GO:0044434
description protein tic chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30371: 287850-290640 , PASA_asmbl_30372: 288779-291294 , PASA_asmbl_30374: 291954-296901 , PASA_asmbl_30376: 297223-301638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_330 0.0 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
2 Hb_001266_160 0.0732350555 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
3 Hb_000317_180 0.0906373119 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
4 Hb_134949_010 0.0980640548 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
5 Hb_002835_090 0.1028503298 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
6 Hb_000898_090 0.1085327416 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105633600 isoform X1 [Jatropha curcas]
7 Hb_004979_050 0.1087051877 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
8 Hb_002477_020 0.1128776377 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
9 Hb_000359_070 0.1132562833 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
10 Hb_000193_220 0.1148762967 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
11 Hb_000069_370 0.1166617407 - - -
12 Hb_001195_290 0.1201070494 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
13 Hb_010721_020 0.1219342908 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
14 Hb_000035_340 0.122545251 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006472_040 0.1262211207 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
16 Hb_011649_010 0.1283221197 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
17 Hb_003494_030 0.1291010951 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
18 Hb_001517_010 0.1306754759 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000118_090 0.1307836539 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
20 Hb_000089_140 0.1334282176 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_330 Hb_000029_330 Hb_001266_160 Hb_001266_160 Hb_000029_330--Hb_001266_160 Hb_000317_180 Hb_000317_180 Hb_000029_330--Hb_000317_180 Hb_134949_010 Hb_134949_010 Hb_000029_330--Hb_134949_010 Hb_002835_090 Hb_002835_090 Hb_000029_330--Hb_002835_090 Hb_000898_090 Hb_000898_090 Hb_000029_330--Hb_000898_090 Hb_004979_050 Hb_004979_050 Hb_000029_330--Hb_004979_050 Hb_000359_070 Hb_000359_070 Hb_001266_160--Hb_000359_070 Hb_001266_160--Hb_004979_050 Hb_001266_160--Hb_000317_180 Hb_001266_160--Hb_134949_010 Hb_000359_160 Hb_000359_160 Hb_001266_160--Hb_000359_160 Hb_002477_020 Hb_002477_020 Hb_000317_180--Hb_002477_020 Hb_000089_140 Hb_000089_140 Hb_000317_180--Hb_000089_140 Hb_000803_170 Hb_000803_170 Hb_000317_180--Hb_000803_170 Hb_009296_030 Hb_009296_030 Hb_000317_180--Hb_009296_030 Hb_002071_030 Hb_002071_030 Hb_134949_010--Hb_002071_030 Hb_001517_010 Hb_001517_010 Hb_134949_010--Hb_001517_010 Hb_001195_290 Hb_001195_290 Hb_134949_010--Hb_001195_290 Hb_134949_010--Hb_000317_180 Hb_134949_010--Hb_009296_030 Hb_001377_060 Hb_001377_060 Hb_002835_090--Hb_001377_060 Hb_011900_020 Hb_011900_020 Hb_002835_090--Hb_011900_020 Hb_002835_090--Hb_000359_070 Hb_007595_050 Hb_007595_050 Hb_002835_090--Hb_007595_050 Hb_000069_370 Hb_000069_370 Hb_002835_090--Hb_000069_370 Hb_000898_090--Hb_134949_010 Hb_000898_090--Hb_001195_290 Hb_007803_040 Hb_007803_040 Hb_000898_090--Hb_007803_040 Hb_000898_090--Hb_001517_010 Hb_001584_210 Hb_001584_210 Hb_000898_090--Hb_001584_210 Hb_000679_320 Hb_000679_320 Hb_004979_050--Hb_000679_320 Hb_004979_050--Hb_000359_160 Hb_008112_020 Hb_008112_020 Hb_004979_050--Hb_008112_020 Hb_004979_050--Hb_001517_010 Hb_006472_040 Hb_006472_040 Hb_004979_050--Hb_006472_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6633 2.77552 22.9089 13.84 2.04334 2.46036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06541 2.65318 1.35057 1.539 68.0312

CAGE analysis