Hb_000076_070

Information

Type -
Description -
Location Contig76: 56143-57614
Sequence    

Annotation

kegg
ID rcu:RCOM_0586950
description hypothetical protein
nr
ID XP_012070776.1
description PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
swissprot
ID Q8VY88
description Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana GN=LTD PE=1 SV=1
trembl
ID A0A067L4S4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00846 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein lhcp translocation defect

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57233: 56217-57414 , PASA_asmbl_57234: 56580-56869
cDNA
(Sanger)
(ID:Location)		 014_L16.ab1: 56217-57311

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_070 0.0 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
2 Hb_009771_080 0.0674403633 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_001691_180 0.0787291718 - - phosphoglycerate mutase, putative [Ricinus communis]
4 Hb_123689_010 0.0989141063 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
5 Hb_029622_060 0.1032014538 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
6 Hb_007044_020 0.1088440294 - - unnamed protein product [Vitis vinifera]
7 Hb_000221_130 0.1118382526 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
8 Hb_008948_130 0.1173440894 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010812_030 0.1174204323 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001269_480 0.1175985329 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
11 Hb_028960_010 0.1189830791 - - phosphoglycerate kinase, putative [Ricinus communis]
12 Hb_000009_470 0.1244578656 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
13 Hb_002413_050 0.125330816 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
14 Hb_002534_090 0.1263814518 - - geranylgeranyl reductase [Hevea brasiliensis]
15 Hb_000367_220 0.1265055923 - - hypothetical protein RCOM_1470580 [Ricinus communis]
16 Hb_004631_020 0.1280520227 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
17 Hb_011344_030 0.1305519049 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
18 Hb_004807_040 0.1310206057 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
19 Hb_163950_040 0.1313160666 - - PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]
20 Hb_001517_010 0.1314928576 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000076_070 Hb_000076_070 Hb_009771_080 Hb_009771_080 Hb_000076_070--Hb_009771_080 Hb_001691_180 Hb_001691_180 Hb_000076_070--Hb_001691_180 Hb_123689_010 Hb_123689_010 Hb_000076_070--Hb_123689_010 Hb_029622_060 Hb_029622_060 Hb_000076_070--Hb_029622_060 Hb_007044_020 Hb_007044_020 Hb_000076_070--Hb_007044_020 Hb_000221_130 Hb_000221_130 Hb_000076_070--Hb_000221_130 Hb_163950_040 Hb_163950_040 Hb_009771_080--Hb_163950_040 Hb_009771_080--Hb_001691_180 Hb_009771_080--Hb_123689_010 Hb_000679_320 Hb_000679_320 Hb_009771_080--Hb_000679_320 Hb_001517_010 Hb_001517_010 Hb_009771_080--Hb_001517_010 Hb_001691_180--Hb_001517_010 Hb_001691_180--Hb_123689_010 Hb_000107_540 Hb_000107_540 Hb_001691_180--Hb_000107_540 Hb_028960_010 Hb_028960_010 Hb_001691_180--Hb_028960_010 Hb_123689_010--Hb_029622_060 Hb_002534_090 Hb_002534_090 Hb_123689_010--Hb_002534_090 Hb_000009_470 Hb_000009_470 Hb_123689_010--Hb_000009_470 Hb_011344_030 Hb_011344_030 Hb_123689_010--Hb_011344_030 Hb_123689_010--Hb_007044_020 Hb_001269_480 Hb_001269_480 Hb_123689_010--Hb_001269_480 Hb_002413_050 Hb_002413_050 Hb_029622_060--Hb_002413_050 Hb_003787_030 Hb_003787_030 Hb_029622_060--Hb_003787_030 Hb_010697_020 Hb_010697_020 Hb_029622_060--Hb_010697_020 Hb_002301_070 Hb_002301_070 Hb_029622_060--Hb_002301_070 Hb_000815_120 Hb_000815_120 Hb_029622_060--Hb_000815_120 Hb_007044_020--Hb_000221_130 Hb_007044_020--Hb_011344_030 Hb_003053_080 Hb_003053_080 Hb_007044_020--Hb_003053_080 Hb_010812_030 Hb_010812_030 Hb_007044_020--Hb_010812_030 Hb_007044_020--Hb_000009_470 Hb_007044_020--Hb_001269_480 Hb_000221_130--Hb_001269_480 Hb_008948_130 Hb_008948_130 Hb_000221_130--Hb_008948_130 Hb_000221_130--Hb_010812_030 Hb_001310_020 Hb_001310_020 Hb_000221_130--Hb_001310_020 Hb_001191_060 Hb_001191_060 Hb_000221_130--Hb_001191_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0517802 0.587973 15.6468 11.037 0 0.0716456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31778 1.28513 0.228431 1.10117 63.6289

CAGE analysis