Hb_002413_050

Information

Type -
Description -
Location Contig2413: 63976-66351
Sequence    

Annotation

kegg
ID pop:POPTR_0018s06150g
description hypothetical protein
nr
ID XP_006371912.1
description hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
swissprot
ID Q9LHF1
description Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=LRX4 PE=2 SV=1
trembl
ID U5FHF4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s06150g PE=4 SV=1
Gene Ontology
ID GO:0009505
description leucine-rich repeat extensin-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25309: 66255-67038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002413_050 0.0 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
2 Hb_002534_090 0.052363728 - - geranylgeranyl reductase [Hevea brasiliensis]
3 Hb_011537_130 0.058649457 - - unnamed protein product [Vitis vinifera]
4 Hb_002044_070 0.061512662 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
5 Hb_029622_060 0.0710557659 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
6 Hb_018202_040 0.0718733349 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
7 Hb_005675_030 0.0812272992 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
8 Hb_002289_070 0.0837095574 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
9 Hb_000928_260 0.0867660652 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
10 Hb_003787_030 0.087471693 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000815_120 0.0891693949 - - calcium ion binding protein, putative [Ricinus communis]
12 Hb_000307_100 0.0897031107 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
13 Hb_002301_070 0.0915098178 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_006573_240 0.0952062156 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
15 Hb_004143_080 0.096218467 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
16 Hb_169492_010 0.0967284541 - - PREDICTED: expansin-like B1 [Jatropha curcas]
17 Hb_010021_040 0.0978266885 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
18 Hb_000983_200 0.098965034 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
19 Hb_000009_470 0.1017797765 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
20 Hb_004920_080 0.1021691219 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_002413_050 Hb_002413_050 Hb_002534_090 Hb_002534_090 Hb_002413_050--Hb_002534_090 Hb_011537_130 Hb_011537_130 Hb_002413_050--Hb_011537_130 Hb_002044_070 Hb_002044_070 Hb_002413_050--Hb_002044_070 Hb_029622_060 Hb_029622_060 Hb_002413_050--Hb_029622_060 Hb_018202_040 Hb_018202_040 Hb_002413_050--Hb_018202_040 Hb_005675_030 Hb_005675_030 Hb_002413_050--Hb_005675_030 Hb_002289_070 Hb_002289_070 Hb_002534_090--Hb_002289_070 Hb_001517_060 Hb_001517_060 Hb_002534_090--Hb_001517_060 Hb_002534_090--Hb_011537_130 Hb_000009_470 Hb_000009_470 Hb_002534_090--Hb_000009_470 Hb_011381_120 Hb_011381_120 Hb_002534_090--Hb_011381_120 Hb_011537_130--Hb_005675_030 Hb_011537_130--Hb_018202_040 Hb_169492_010 Hb_169492_010 Hb_011537_130--Hb_169492_010 Hb_011537_130--Hb_002044_070 Hb_002044_070--Hb_029622_060 Hb_002044_070--Hb_005675_030 Hb_002044_070--Hb_002534_090 Hb_007595_020 Hb_007595_020 Hb_002044_070--Hb_007595_020 Hb_123689_010 Hb_123689_010 Hb_029622_060--Hb_123689_010 Hb_003787_030 Hb_003787_030 Hb_029622_060--Hb_003787_030 Hb_010697_020 Hb_010697_020 Hb_029622_060--Hb_010697_020 Hb_002301_070 Hb_002301_070 Hb_029622_060--Hb_002301_070 Hb_000815_120 Hb_000815_120 Hb_029622_060--Hb_000815_120 Hb_018202_040--Hb_005675_030 Hb_018202_040--Hb_169492_010 Hb_010021_040 Hb_010021_040 Hb_018202_040--Hb_010021_040 Hb_000883_080 Hb_000883_080 Hb_018202_040--Hb_000883_080 Hb_001488_160 Hb_001488_160 Hb_005675_030--Hb_001488_160 Hb_080048_030 Hb_080048_030 Hb_005675_030--Hb_080048_030 Hb_018487_040 Hb_018487_040 Hb_005675_030--Hb_018487_040 Hb_005675_030--Hb_169492_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0895718 2.29644 12.8937 14.39 0.062753 0.0881352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.07448 0.351606 0.0369522 0.536685 66.4523

CAGE analysis