Hb_007595_020

Information

Type -
Description -
Location Contig7595: 41781-43318
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00005
description matK; maturase K
nr
ID YP_004327643.1
description maturase K [Hevea brasiliensis]
swissprot
ID B1NWD1
description Maturase K OS=Manihot esculenta GN=matK PE=3 SV=1
trembl
ID F2X097
description Maturase K OS=Hevea brasiliensis GN=matK PE=3 SV=1
Gene Ontology
ID GO:0009507
description maturase k

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57206: 38903-47788 , PASA_asmbl_57207: 38903-47788 , PASA_asmbl_57208: 38861-47788 , PASA_asmbl_57209: 38861-47788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007595_020 0.0 - - maturase K [Hevea brasiliensis]
2 Hb_068804_110 0.0728294573 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
3 Hb_000367_220 0.0886604108 - - hypothetical protein RCOM_1470580 [Ricinus communis]
4 Hb_002044_070 0.0906567847 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
5 Hb_005228_060 0.0961959609 - - PREDICTED: uncharacterized protein LOC102604101 [Solanum tuberosum]
6 Hb_000009_470 0.1015422305 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
7 Hb_029622_060 0.1036250294 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
8 Hb_010080_070 0.1040772962 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
9 Hb_156850_020 0.1047888355 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
10 Hb_002413_050 0.1071725436 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
11 Hb_000992_090 0.1111066236 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
12 Hb_007595_050 0.1134409956 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
13 Hb_001584_210 0.1138349131 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
14 Hb_028960_010 0.1163913517 - - phosphoglycerate kinase, putative [Ricinus communis]
15 Hb_007044_020 0.1164107267 - - unnamed protein product [Vitis vinifera]
16 Hb_002534_090 0.1187338475 - - geranylgeranyl reductase [Hevea brasiliensis]
17 Hb_003944_010 0.1202605987 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
18 Hb_000983_200 0.1224857214 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
19 Hb_106552_030 0.1227570883 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
20 Hb_123689_010 0.1234393895 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]

Gene co-expression network

sample Hb_007595_020 Hb_007595_020 Hb_068804_110 Hb_068804_110 Hb_007595_020--Hb_068804_110 Hb_000367_220 Hb_000367_220 Hb_007595_020--Hb_000367_220 Hb_002044_070 Hb_002044_070 Hb_007595_020--Hb_002044_070 Hb_005228_060 Hb_005228_060 Hb_007595_020--Hb_005228_060 Hb_000009_470 Hb_000009_470 Hb_007595_020--Hb_000009_470 Hb_029622_060 Hb_029622_060 Hb_007595_020--Hb_029622_060 Hb_012940_020 Hb_012940_020 Hb_068804_110--Hb_012940_020 Hb_156850_020 Hb_156850_020 Hb_068804_110--Hb_156850_020 Hb_001610_100 Hb_001610_100 Hb_068804_110--Hb_001610_100 Hb_001085_200 Hb_001085_200 Hb_068804_110--Hb_001085_200 Hb_028960_010 Hb_028960_010 Hb_068804_110--Hb_028960_010 Hb_000367_220--Hb_068804_110 Hb_000367_220--Hb_156850_020 Hb_000367_220--Hb_028960_010 Hb_123689_010 Hb_123689_010 Hb_000367_220--Hb_123689_010 Hb_007044_020 Hb_007044_020 Hb_000367_220--Hb_007044_020 Hb_002413_050 Hb_002413_050 Hb_002044_070--Hb_002413_050 Hb_011537_130 Hb_011537_130 Hb_002044_070--Hb_011537_130 Hb_002044_070--Hb_029622_060 Hb_005675_030 Hb_005675_030 Hb_002044_070--Hb_005675_030 Hb_002534_090 Hb_002534_090 Hb_002044_070--Hb_002534_090 Hb_007595_050 Hb_007595_050 Hb_005228_060--Hb_007595_050 Hb_005228_060--Hb_000367_220 Hb_005228_060--Hb_028960_010 Hb_005228_060--Hb_068804_110 Hb_000186_160 Hb_000186_160 Hb_005228_060--Hb_000186_160 Hb_011344_030 Hb_011344_030 Hb_000009_470--Hb_011344_030 Hb_001517_060 Hb_001517_060 Hb_000009_470--Hb_001517_060 Hb_004631_020 Hb_004631_020 Hb_000009_470--Hb_004631_020 Hb_000009_470--Hb_002534_090 Hb_000009_470--Hb_007044_020 Hb_004712_230 Hb_004712_230 Hb_000009_470--Hb_004712_230 Hb_029622_060--Hb_002413_050 Hb_029622_060--Hb_123689_010 Hb_003787_030 Hb_003787_030 Hb_029622_060--Hb_003787_030 Hb_010697_020 Hb_010697_020 Hb_029622_060--Hb_010697_020 Hb_002301_070 Hb_002301_070 Hb_029622_060--Hb_002301_070 Hb_000815_120 Hb_000815_120 Hb_029622_060--Hb_000815_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.586709 1.74555 11.2528 10.6594 0.465366 1.00499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.251705 0.0329985 0.429077 0.515807 62.5245

CAGE analysis