Hb_000367_220

Information

Type -
Description -
Location Contig367: 181163-183784
Sequence    

Annotation

kegg
ID rcu:RCOM_1470580
description hypothetical protein
nr
ID XP_002514700.1
description hypothetical protein RCOM_1470580 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RLT1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1470580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37750: 182292-182629 , PASA_asmbl_37751: 182960-183492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_220 0.0 - - hypothetical protein RCOM_1470580 [Ricinus communis]
2 Hb_007595_020 0.0886604108 - - maturase K [Hevea brasiliensis]
3 Hb_068804_110 0.1013203439 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
4 Hb_156850_020 0.1040036744 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
5 Hb_028960_010 0.1068750127 - - phosphoglycerate kinase, putative [Ricinus communis]
6 Hb_123689_010 0.121271272 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
7 Hb_007044_020 0.1214621351 - - unnamed protein product [Vitis vinifera]
8 Hb_001584_210 0.1224781796 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
9 Hb_005228_060 0.1228832743 - - PREDICTED: uncharacterized protein LOC102604101 [Solanum tuberosum]
10 Hb_106552_030 0.1229549618 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
11 Hb_012940_020 0.1238243617 - - zeaxanthin epoxidase, putative [Ricinus communis]
12 Hb_002413_050 0.1254581139 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
13 Hb_010080_070 0.125676647 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
14 Hb_000076_070 0.1265055923 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
15 Hb_029622_060 0.1266109407 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
16 Hb_004979_050 0.1266109662 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
17 Hb_000992_090 0.1274579415 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
18 Hb_001691_180 0.1292683476 - - phosphoglycerate mutase, putative [Ricinus communis]
19 Hb_002044_070 0.1311116422 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
20 Hb_000009_470 0.132691515 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000367_220 Hb_000367_220 Hb_007595_020 Hb_007595_020 Hb_000367_220--Hb_007595_020 Hb_068804_110 Hb_068804_110 Hb_000367_220--Hb_068804_110 Hb_156850_020 Hb_156850_020 Hb_000367_220--Hb_156850_020 Hb_028960_010 Hb_028960_010 Hb_000367_220--Hb_028960_010 Hb_123689_010 Hb_123689_010 Hb_000367_220--Hb_123689_010 Hb_007044_020 Hb_007044_020 Hb_000367_220--Hb_007044_020 Hb_007595_020--Hb_068804_110 Hb_002044_070 Hb_002044_070 Hb_007595_020--Hb_002044_070 Hb_005228_060 Hb_005228_060 Hb_007595_020--Hb_005228_060 Hb_000009_470 Hb_000009_470 Hb_007595_020--Hb_000009_470 Hb_029622_060 Hb_029622_060 Hb_007595_020--Hb_029622_060 Hb_012940_020 Hb_012940_020 Hb_068804_110--Hb_012940_020 Hb_068804_110--Hb_156850_020 Hb_001610_100 Hb_001610_100 Hb_068804_110--Hb_001610_100 Hb_001085_200 Hb_001085_200 Hb_068804_110--Hb_001085_200 Hb_068804_110--Hb_028960_010 Hb_106552_030 Hb_106552_030 Hb_156850_020--Hb_106552_030 Hb_010080_070 Hb_010080_070 Hb_156850_020--Hb_010080_070 Hb_156850_020--Hb_028960_010 Hb_156850_020--Hb_012940_020 Hb_011900_020 Hb_011900_020 Hb_156850_020--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_156850_020--Hb_000359_070 Hb_028960_010--Hb_012940_020 Hb_001691_180 Hb_001691_180 Hb_028960_010--Hb_001691_180 Hb_028960_010--Hb_000359_070 Hb_028960_010--Hb_106552_030 Hb_123689_010--Hb_029622_060 Hb_002534_090 Hb_002534_090 Hb_123689_010--Hb_002534_090 Hb_123689_010--Hb_000009_470 Hb_011344_030 Hb_011344_030 Hb_123689_010--Hb_011344_030 Hb_123689_010--Hb_007044_020 Hb_001269_480 Hb_001269_480 Hb_123689_010--Hb_001269_480 Hb_000221_130 Hb_000221_130 Hb_007044_020--Hb_000221_130 Hb_007044_020--Hb_011344_030 Hb_003053_080 Hb_003053_080 Hb_007044_020--Hb_003053_080 Hb_010812_030 Hb_010812_030 Hb_007044_020--Hb_010812_030 Hb_007044_020--Hb_000009_470 Hb_007044_020--Hb_001269_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.141703 0.170619 1.46392 1.27389 0 0.151349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0418214 0.0986904 0.0611162 0.105475 7.41023

CAGE analysis