Hb_003053_080

Information

Type -
Description -
Location Contig3053: 109710-111296
Sequence    

Annotation

kegg
ID rcu:RCOM_1095250
description hypothetical protein
nr
ID XP_002524643.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SF74
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1095250 PE=4 SV=1
Gene Ontology
ID GO:0010264
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003053_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007044_020 0.0750366017 - - unnamed protein product [Vitis vinifera]
3 Hb_032631_060 0.0754712312 - - Myosin heavy chain, putative [Ricinus communis]
4 Hb_000923_030 0.0755664069 - - F-box family protein [Populus trichocarpa]
5 Hb_001135_170 0.0767300155 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
6 Hb_011344_030 0.0782061383 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
7 Hb_001104_080 0.0785376569 - - peroxiredoxin, putative [Ricinus communis]
8 Hb_004631_020 0.0794658624 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
9 Hb_001269_480 0.0814534267 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
10 Hb_010812_030 0.0831130679 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003653_030 0.0848607167 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_000825_010 0.0848790183 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
13 Hb_000029_150 0.0850334377 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003090_050 0.0871777907 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
15 Hb_132840_050 0.0883392484 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
16 Hb_000251_160 0.0900017127 - - chlorophyll A/B binding protein, putative [Ricinus communis]
17 Hb_000221_130 0.0908078697 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
18 Hb_003847_070 0.0909094314 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
19 Hb_000010_380 0.091869336 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
20 Hb_023344_040 0.0919914051 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003053_080 Hb_003053_080 Hb_007044_020 Hb_007044_020 Hb_003053_080--Hb_007044_020 Hb_032631_060 Hb_032631_060 Hb_003053_080--Hb_032631_060 Hb_000923_030 Hb_000923_030 Hb_003053_080--Hb_000923_030 Hb_001135_170 Hb_001135_170 Hb_003053_080--Hb_001135_170 Hb_011344_030 Hb_011344_030 Hb_003053_080--Hb_011344_030 Hb_001104_080 Hb_001104_080 Hb_003053_080--Hb_001104_080 Hb_000221_130 Hb_000221_130 Hb_007044_020--Hb_000221_130 Hb_007044_020--Hb_011344_030 Hb_010812_030 Hb_010812_030 Hb_007044_020--Hb_010812_030 Hb_000009_470 Hb_000009_470 Hb_007044_020--Hb_000009_470 Hb_001269_480 Hb_001269_480 Hb_007044_020--Hb_001269_480 Hb_032631_060--Hb_001104_080 Hb_000010_380 Hb_000010_380 Hb_032631_060--Hb_000010_380 Hb_004116_030 Hb_004116_030 Hb_032631_060--Hb_004116_030 Hb_000805_080 Hb_000805_080 Hb_032631_060--Hb_000805_080 Hb_032631_060--Hb_000923_030 Hb_003653_030 Hb_003653_030 Hb_032631_060--Hb_003653_030 Hb_000923_030--Hb_001104_080 Hb_003090_050 Hb_003090_050 Hb_000923_030--Hb_003090_050 Hb_000825_010 Hb_000825_010 Hb_000923_030--Hb_000825_010 Hb_001287_070 Hb_001287_070 Hb_000923_030--Hb_001287_070 Hb_000923_030--Hb_000805_080 Hb_008748_050 Hb_008748_050 Hb_000923_030--Hb_008748_050 Hb_004631_020 Hb_004631_020 Hb_001135_170--Hb_004631_020 Hb_000992_090 Hb_000992_090 Hb_001135_170--Hb_000992_090 Hb_001135_170--Hb_011344_030 Hb_001832_180 Hb_001832_180 Hb_001135_170--Hb_001832_180 Hb_023344_040 Hb_023344_040 Hb_001135_170--Hb_023344_040 Hb_000261_390 Hb_000261_390 Hb_001135_170--Hb_000261_390 Hb_011344_030--Hb_000009_470 Hb_011344_030--Hb_023344_040 Hb_000111_460 Hb_000111_460 Hb_011344_030--Hb_000111_460 Hb_011344_030--Hb_000992_090 Hb_001104_080--Hb_000825_010 Hb_001104_080--Hb_000805_080 Hb_007559_020 Hb_007559_020 Hb_001104_080--Hb_007559_020 Hb_001104_080--Hb_000010_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150402 0.713253 34.1923 11.6599 0.0730801 0.153147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.380566 0.29941 0.953965 0.146983 113.103

CAGE analysis