Hb_007044_020

Information

Type -
Description -
Location Contig7044: 3185-12006
Sequence    

Annotation

kegg
ID pop:POPTR_0004s10520g
description POPTRDRAFT_556169; hypothetical protein
nr
ID CBI16874.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9LFT0
description Protein trichome birefringence-like 19 OS=Arabidopsis thaliana GN=TBL19 PE=3 SV=1
trembl
ID F6GVR8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54994: 5174-5965 , PASA_asmbl_54995: 7508-7867 , PASA_asmbl_54996: 7523-7867 , PASA_asmbl_54999: 10481-10858 , PASA_asmbl_55000: 10861-11736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000221_130 0.0584260756 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
3 Hb_011344_030 0.0727123959 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
4 Hb_003053_080 0.0750366017 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010812_030 0.0757719838 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000009_470 0.0778097159 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
7 Hb_001269_480 0.0798757493 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
8 Hb_029622_060 0.0879400799 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
9 Hb_004631_020 0.0909199193 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
10 Hb_001310_020 0.0915358916 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
11 Hb_123689_010 0.0924775276 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
12 Hb_005736_030 0.0929479472 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
13 Hb_002818_130 0.0933319019 - - cytochrome P450, putative [Ricinus communis]
14 Hb_001135_170 0.0935461804 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
15 Hb_000029_150 0.0937866544 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000992_090 0.0944962782 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
17 Hb_003847_070 0.0955440517 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
18 Hb_008948_130 0.0968681296 - - conserved hypothetical protein [Ricinus communis]
19 Hb_023344_040 0.0975131292 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004712_230 0.0985420115 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_007044_020 Hb_007044_020 Hb_000221_130 Hb_000221_130 Hb_007044_020--Hb_000221_130 Hb_011344_030 Hb_011344_030 Hb_007044_020--Hb_011344_030 Hb_003053_080 Hb_003053_080 Hb_007044_020--Hb_003053_080 Hb_010812_030 Hb_010812_030 Hb_007044_020--Hb_010812_030 Hb_000009_470 Hb_000009_470 Hb_007044_020--Hb_000009_470 Hb_001269_480 Hb_001269_480 Hb_007044_020--Hb_001269_480 Hb_000221_130--Hb_001269_480 Hb_008948_130 Hb_008948_130 Hb_000221_130--Hb_008948_130 Hb_000221_130--Hb_010812_030 Hb_001310_020 Hb_001310_020 Hb_000221_130--Hb_001310_020 Hb_001191_060 Hb_001191_060 Hb_000221_130--Hb_001191_060 Hb_011344_030--Hb_000009_470 Hb_023344_040 Hb_023344_040 Hb_011344_030--Hb_023344_040 Hb_000111_460 Hb_000111_460 Hb_011344_030--Hb_000111_460 Hb_001135_170 Hb_001135_170 Hb_011344_030--Hb_001135_170 Hb_000992_090 Hb_000992_090 Hb_011344_030--Hb_000992_090 Hb_032631_060 Hb_032631_060 Hb_003053_080--Hb_032631_060 Hb_000923_030 Hb_000923_030 Hb_003053_080--Hb_000923_030 Hb_003053_080--Hb_001135_170 Hb_003053_080--Hb_011344_030 Hb_001104_080 Hb_001104_080 Hb_003053_080--Hb_001104_080 Hb_000029_150 Hb_000029_150 Hb_010812_030--Hb_000029_150 Hb_158597_010 Hb_158597_010 Hb_010812_030--Hb_158597_010 Hb_010812_030--Hb_001269_480 Hb_005483_050 Hb_005483_050 Hb_010812_030--Hb_005483_050 Hb_005736_030 Hb_005736_030 Hb_010812_030--Hb_005736_030 Hb_001517_060 Hb_001517_060 Hb_000009_470--Hb_001517_060 Hb_004631_020 Hb_004631_020 Hb_000009_470--Hb_004631_020 Hb_002534_090 Hb_002534_090 Hb_000009_470--Hb_002534_090 Hb_004712_230 Hb_004712_230 Hb_000009_470--Hb_004712_230 Hb_001269_480--Hb_001191_060 Hb_002818_130 Hb_002818_130 Hb_001269_480--Hb_002818_130 Hb_001269_480--Hb_001310_020 Hb_001348_160 Hb_001348_160 Hb_001269_480--Hb_001348_160 Hb_086022_020 Hb_086022_020 Hb_001269_480--Hb_086022_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.308659 0.296435 9.02732 4.77139 0.0919158 0.0443079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0907243 0.160642 0.102786 0.176774 33.4292

CAGE analysis