Hb_005483_050

Information

Type -
Description -
Location Contig5483: 42018-42386
Sequence    

Annotation

kegg
ID rcu:RCOM_1045940
description hypothetical protein
nr
ID XP_002514063.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RK19
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1
Gene Ontology
ID GO:0009523
description membrane family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48053: 41882-42656
cDNA
(Sanger)
(ID:Location)		 013_B07.ab1: 41882-42489 , 023_O15.ab1: 41960-42379

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005483_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000243_190 0.0499439026 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
3 Hb_000940_060 0.0505847998 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
4 Hb_132840_050 0.0551574912 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
5 Hb_180007_010 0.0561006267 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
6 Hb_000029_150 0.058933769 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000251_160 0.0608199623 - - chlorophyll A/B binding protein, putative [Ricinus communis]
8 Hb_153106_010 0.064661364 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
9 Hb_158597_010 0.0662142202 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
10 Hb_010812_030 0.0695188773 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001310_020 0.0708390492 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
12 Hb_002374_480 0.0714746082 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_013405_240 0.0726283394 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
14 Hb_016334_010 0.0733420949 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
15 Hb_000221_130 0.0737187513 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
16 Hb_007416_250 0.075583621 - - -
17 Hb_001191_060 0.0758309571 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
18 Hb_004129_170 0.076195695 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
19 Hb_000373_210 0.0776927193 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
20 Hb_002818_130 0.0778894352 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_005483_050 Hb_005483_050 Hb_000243_190 Hb_000243_190 Hb_005483_050--Hb_000243_190 Hb_000940_060 Hb_000940_060 Hb_005483_050--Hb_000940_060 Hb_132840_050 Hb_132840_050 Hb_005483_050--Hb_132840_050 Hb_180007_010 Hb_180007_010 Hb_005483_050--Hb_180007_010 Hb_000029_150 Hb_000029_150 Hb_005483_050--Hb_000029_150 Hb_000251_160 Hb_000251_160 Hb_005483_050--Hb_000251_160 Hb_013405_240 Hb_013405_240 Hb_000243_190--Hb_013405_240 Hb_007416_250 Hb_007416_250 Hb_000243_190--Hb_007416_250 Hb_000243_190--Hb_132840_050 Hb_000243_190--Hb_000940_060 Hb_016334_010 Hb_016334_010 Hb_000243_190--Hb_016334_010 Hb_000243_190--Hb_000029_150 Hb_158597_010 Hb_158597_010 Hb_000940_060--Hb_158597_010 Hb_010666_020 Hb_010666_020 Hb_000940_060--Hb_010666_020 Hb_000433_040 Hb_000433_040 Hb_000940_060--Hb_000433_040 Hb_081344_010 Hb_081344_010 Hb_000940_060--Hb_081344_010 Hb_153106_010 Hb_153106_010 Hb_132840_050--Hb_153106_010 Hb_132840_050--Hb_180007_010 Hb_132840_050--Hb_016334_010 Hb_132840_050--Hb_000251_160 Hb_000825_010 Hb_000825_010 Hb_132840_050--Hb_000825_010 Hb_180007_010--Hb_153106_010 Hb_002374_480 Hb_002374_480 Hb_180007_010--Hb_002374_480 Hb_180007_010--Hb_000251_160 Hb_000373_210 Hb_000373_210 Hb_180007_010--Hb_000373_210 Hb_004129_170 Hb_004129_170 Hb_180007_010--Hb_004129_170 Hb_000029_150--Hb_013405_240 Hb_000029_150--Hb_007416_250 Hb_005736_030 Hb_005736_030 Hb_000029_150--Hb_005736_030 Hb_000029_150--Hb_132840_050 Hb_013818_020 Hb_013818_020 Hb_000029_150--Hb_013818_020 Hb_000251_160--Hb_004129_170 Hb_086022_020 Hb_086022_020 Hb_000251_160--Hb_086022_020 Hb_000251_160--Hb_002374_480 Hb_000251_160--Hb_153106_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.193321 101.08 53.5666 0.890592 0.352736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.561433 357.785

CAGE analysis