Hb_011344_030

Information

Type -
Description -
Location Contig11344: 11816-16171
Sequence    

Annotation

kegg
ID rcu:RCOM_1679710
description translation elongation factor G, putative
nr
ID XP_012087125.1
description PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
swissprot
ID P34811
description Elongation factor G-1, chloroplastic OS=Glycine max GN=fusA1 PE=3 SV=2
trembl
ID A0A067K049
description Elongation factor G, chloroplastic OS=Jatropha curcas GN=JCGZ_20776 PE=3 SV=1
Gene Ontology
ID GO:0005739
description elongation factor g- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03993: 11691-16039
cDNA
(Sanger)
(ID:Location)		 006_N24.ab1: 16679-17436

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011344_030 0.0 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
2 Hb_000009_470 0.0563377649 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
3 Hb_023344_040 0.0568355221 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000111_460 0.066834741 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
5 Hb_001135_170 0.0673517763 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
6 Hb_007044_020 0.0727123959 - - unnamed protein product [Vitis vinifera]
7 Hb_000992_090 0.0746659396 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
8 Hb_003053_080 0.0782061383 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004631_020 0.0789987276 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
10 Hb_003847_070 0.07921744 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
11 Hb_003090_050 0.0829807007 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
12 Hb_008748_050 0.0848069793 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
13 Hb_001584_210 0.0851053807 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
14 Hb_000841_040 0.0873450826 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
15 Hb_000221_130 0.0876974502 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
16 Hb_001269_480 0.088152294 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
17 Hb_000039_210 0.0883201264 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
18 Hb_011381_120 0.0903702534 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
19 Hb_000261_390 0.0905707356 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
20 Hb_004712_230 0.0913760847 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_011344_030 Hb_011344_030 Hb_000009_470 Hb_000009_470 Hb_011344_030--Hb_000009_470 Hb_023344_040 Hb_023344_040 Hb_011344_030--Hb_023344_040 Hb_000111_460 Hb_000111_460 Hb_011344_030--Hb_000111_460 Hb_001135_170 Hb_001135_170 Hb_011344_030--Hb_001135_170 Hb_007044_020 Hb_007044_020 Hb_011344_030--Hb_007044_020 Hb_000992_090 Hb_000992_090 Hb_011344_030--Hb_000992_090 Hb_001517_060 Hb_001517_060 Hb_000009_470--Hb_001517_060 Hb_004631_020 Hb_004631_020 Hb_000009_470--Hb_004631_020 Hb_002534_090 Hb_002534_090 Hb_000009_470--Hb_002534_090 Hb_000009_470--Hb_007044_020 Hb_004712_230 Hb_004712_230 Hb_000009_470--Hb_004712_230 Hb_023344_040--Hb_000992_090 Hb_023344_040--Hb_000111_460 Hb_023344_040--Hb_001135_170 Hb_023344_040--Hb_000009_470 Hb_014361_120 Hb_014361_120 Hb_023344_040--Hb_014361_120 Hb_003090_050 Hb_003090_050 Hb_000111_460--Hb_003090_050 Hb_008748_050 Hb_008748_050 Hb_000111_460--Hb_008748_050 Hb_001287_070 Hb_001287_070 Hb_000111_460--Hb_001287_070 Hb_000841_040 Hb_000841_040 Hb_000111_460--Hb_000841_040 Hb_005000_120 Hb_005000_120 Hb_000111_460--Hb_005000_120 Hb_011381_120 Hb_011381_120 Hb_000111_460--Hb_011381_120 Hb_001135_170--Hb_004631_020 Hb_001135_170--Hb_000992_090 Hb_001832_180 Hb_001832_180 Hb_001135_170--Hb_001832_180 Hb_000261_390 Hb_000261_390 Hb_001135_170--Hb_000261_390 Hb_000221_130 Hb_000221_130 Hb_007044_020--Hb_000221_130 Hb_003053_080 Hb_003053_080 Hb_007044_020--Hb_003053_080 Hb_010812_030 Hb_010812_030 Hb_007044_020--Hb_010812_030 Hb_001269_480 Hb_001269_480 Hb_007044_020--Hb_001269_480 Hb_000992_090--Hb_000009_470 Hb_000029_390 Hb_000029_390 Hb_000992_090--Hb_000029_390 Hb_000103_240 Hb_000103_240 Hb_000992_090--Hb_000103_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.78167 11.7156 138.388 50.6031 0.865235 1.84577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.17302 1.0834 1.04635 2.22277 428.666

CAGE analysis