Hb_000992_090

Information

Type transcription factor
Description TF Family: Orphans
Location Contig992: 216591-220352
Sequence    

Annotation

kegg
ID rcu:RCOM_1703090
description CIL, putative
nr
ID XP_002518229.1
description CIL, putative [Ricinus communis]
swissprot
ID Q9LU68
description Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana GN=CIA2 PE=2 SV=1
trembl
ID B9RWW0
description CIL, putative OS=Ricinus communis GN=RCOM_1703090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64793: 215998-219959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000992_090 0.0 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
2 Hb_023344_040 0.0620150176 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001135_170 0.0656222935 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
4 Hb_011344_030 0.0746659396 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
5 Hb_000009_470 0.0815986298 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
6 Hb_000029_390 0.0859590125 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_000103_240 0.08709407 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Jatropha curcas]
8 Hb_010080_070 0.0896302575 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
9 Hb_001951_040 0.0900770103 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
10 Hb_004631_020 0.0903028592 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
11 Hb_106552_030 0.0939181653 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
12 Hb_007044_020 0.0944962782 - - unnamed protein product [Vitis vinifera]
13 Hb_001135_190 0.0967188745 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
14 Hb_004712_230 0.0980954363 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
15 Hb_000261_390 0.0988324142 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
16 Hb_001517_060 0.0992013631 - - phosphoribulose kinase, putative [Ricinus communis]
17 Hb_003053_080 0.1011872478 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004920_080 0.1032836322 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
19 Hb_000282_100 0.1057102456 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
20 Hb_068804_110 0.1067423161 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000992_090 Hb_000992_090 Hb_023344_040 Hb_023344_040 Hb_000992_090--Hb_023344_040 Hb_001135_170 Hb_001135_170 Hb_000992_090--Hb_001135_170 Hb_011344_030 Hb_011344_030 Hb_000992_090--Hb_011344_030 Hb_000009_470 Hb_000009_470 Hb_000992_090--Hb_000009_470 Hb_000029_390 Hb_000029_390 Hb_000992_090--Hb_000029_390 Hb_000103_240 Hb_000103_240 Hb_000992_090--Hb_000103_240 Hb_023344_040--Hb_011344_030 Hb_000111_460 Hb_000111_460 Hb_023344_040--Hb_000111_460 Hb_023344_040--Hb_001135_170 Hb_023344_040--Hb_000009_470 Hb_014361_120 Hb_014361_120 Hb_023344_040--Hb_014361_120 Hb_004631_020 Hb_004631_020 Hb_001135_170--Hb_004631_020 Hb_001135_170--Hb_011344_030 Hb_001832_180 Hb_001832_180 Hb_001135_170--Hb_001832_180 Hb_000261_390 Hb_000261_390 Hb_001135_170--Hb_000261_390 Hb_011344_030--Hb_000009_470 Hb_011344_030--Hb_000111_460 Hb_007044_020 Hb_007044_020 Hb_011344_030--Hb_007044_020 Hb_001517_060 Hb_001517_060 Hb_000009_470--Hb_001517_060 Hb_000009_470--Hb_004631_020 Hb_002534_090 Hb_002534_090 Hb_000009_470--Hb_002534_090 Hb_000009_470--Hb_007044_020 Hb_004712_230 Hb_004712_230 Hb_000009_470--Hb_004712_230 Hb_004920_080 Hb_004920_080 Hb_000029_390--Hb_004920_080 Hb_002995_060 Hb_002995_060 Hb_000029_390--Hb_002995_060 Hb_000282_100 Hb_000282_100 Hb_000029_390--Hb_000282_100 Hb_009093_020 Hb_009093_020 Hb_000029_390--Hb_009093_020 Hb_000029_390--Hb_001517_060 Hb_000029_390--Hb_004631_020 Hb_003905_030 Hb_003905_030 Hb_000103_240--Hb_003905_030 Hb_000103_240--Hb_023344_040 Hb_000103_240--Hb_001135_170 Hb_106552_030 Hb_106552_030 Hb_000103_240--Hb_106552_030 Hb_028960_010 Hb_028960_010 Hb_000103_240--Hb_028960_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.646629 3.4508 24.2658 9.37984 0.310879 0.353523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.670212 0.401728 0.801354 0.561386 108.592

CAGE analysis