Hb_028960_010

Information

Type -
Description -
Location Contig28960: 4936-6499
Sequence    

Annotation

kegg
ID rcu:RCOM_1574580
description phosphoglycerate kinase, putative (EC:2.7.2.3)
nr
ID XP_002513353.1
description phosphoglycerate kinase, putative [Ricinus communis]
swissprot
ID Q42961
description Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9RHY4
description Phosphoglycerate kinase OS=Ricinus communis GN=RCOM_1574580 PE=3 SV=1
Gene Ontology
ID GO:0004618
description phosphoglycerate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30306: 5006-6596
cDNA
(Sanger)
(ID:Location)		 012_J03.ab1: 5006-6538 , 032_J11.ab1: 5034-6563 , 036_G05.ab1: 5082-6596 , 040_N16.ab1: 5015-6538

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028960_010 0.0 - - phosphoglycerate kinase, putative [Ricinus communis]
2 Hb_012940_020 0.0661222929 - - zeaxanthin epoxidase, putative [Ricinus communis]
3 Hb_156850_020 0.0730146589 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
4 Hb_068804_110 0.0947473856 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
5 Hb_001691_180 0.0999444912 - - phosphoglycerate mutase, putative [Ricinus communis]
6 Hb_000359_070 0.1012771462 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
7 Hb_106552_030 0.1053945782 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
8 Hb_010080_070 0.1055274703 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
9 Hb_000367_220 0.1068750127 - - hypothetical protein RCOM_1470580 [Ricinus communis]
10 Hb_011900_020 0.1145894486 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
11 Hb_000992_090 0.1158258112 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
12 Hb_007595_020 0.1163913517 - - maturase K [Hevea brasiliensis]
13 Hb_123689_010 0.1166006463 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
14 Hb_004979_050 0.1167120634 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
15 Hb_003336_020 0.1178667 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
16 Hb_000076_070 0.1189830791 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
17 Hb_000103_240 0.1194915042 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Jatropha curcas]
18 Hb_001517_010 0.1202245835 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000679_320 0.1203443007 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
20 Hb_005228_060 0.1243721144 - - PREDICTED: uncharacterized protein LOC102604101 [Solanum tuberosum]

Gene co-expression network

sample Hb_028960_010 Hb_028960_010 Hb_012940_020 Hb_012940_020 Hb_028960_010--Hb_012940_020 Hb_156850_020 Hb_156850_020 Hb_028960_010--Hb_156850_020 Hb_068804_110 Hb_068804_110 Hb_028960_010--Hb_068804_110 Hb_001691_180 Hb_001691_180 Hb_028960_010--Hb_001691_180 Hb_000359_070 Hb_000359_070 Hb_028960_010--Hb_000359_070 Hb_106552_030 Hb_106552_030 Hb_028960_010--Hb_106552_030 Hb_012940_020--Hb_156850_020 Hb_012940_020--Hb_068804_110 Hb_003336_020 Hb_003336_020 Hb_012940_020--Hb_003336_020 Hb_012940_020--Hb_106552_030 Hb_012940_020--Hb_000359_070 Hb_156850_020--Hb_106552_030 Hb_010080_070 Hb_010080_070 Hb_156850_020--Hb_010080_070 Hb_011900_020 Hb_011900_020 Hb_156850_020--Hb_011900_020 Hb_156850_020--Hb_000359_070 Hb_007595_020 Hb_007595_020 Hb_068804_110--Hb_007595_020 Hb_068804_110--Hb_156850_020 Hb_001610_100 Hb_001610_100 Hb_068804_110--Hb_001610_100 Hb_001085_200 Hb_001085_200 Hb_068804_110--Hb_001085_200 Hb_000076_070 Hb_000076_070 Hb_001691_180--Hb_000076_070 Hb_001517_010 Hb_001517_010 Hb_001691_180--Hb_001517_010 Hb_123689_010 Hb_123689_010 Hb_001691_180--Hb_123689_010 Hb_009771_080 Hb_009771_080 Hb_001691_180--Hb_009771_080 Hb_000107_540 Hb_000107_540 Hb_001691_180--Hb_000107_540 Hb_000359_070--Hb_011900_020 Hb_001266_160 Hb_001266_160 Hb_000359_070--Hb_001266_160 Hb_000038_020 Hb_000038_020 Hb_000359_070--Hb_000038_020 Hb_106552_030--Hb_010080_070 Hb_000992_090 Hb_000992_090 Hb_106552_030--Hb_000992_090 Hb_106552_030--Hb_068804_110 Hb_000360_010 Hb_000360_010 Hb_106552_030--Hb_000360_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22987 18.7431 145.635 107.187 3.66586 4.69559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6367 9.52436 20.0239 23.0273 799.808

CAGE analysis