Hb_000360_010

Information

Type -
Description -
Location Contig360: 3034-60537
Sequence    

Annotation

kegg
ID rcu:RCOM_0502090
description glutamate synthase, putative (EC:1.4.7.1)
nr
ID XP_012082579.1
description PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9ZNZ7
description Ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLU1 PE=1 SV=3
trembl
ID A0A067KBU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16658 PE=4 SV=1
Gene Ontology
ID GO:0015930
description ferredoxin-dependent glutamate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37095: 4652-4784 , PASA_asmbl_37096: 5383-5770 , PASA_asmbl_37097: 20465-20654 , PASA_asmbl_37098: 28870-29089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000360_010 0.0 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_011900_020 0.0831725467 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
3 Hb_156850_020 0.0918246704 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
4 Hb_003905_030 0.1009738868 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
5 Hb_106552_030 0.1036538984 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
6 Hb_000359_070 0.1082884606 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
7 Hb_010080_070 0.1178547281 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
8 Hb_006816_040 0.122183016 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
9 Hb_012940_020 0.1255220997 - - zeaxanthin epoxidase, putative [Ricinus communis]
10 Hb_001584_050 0.1280153714 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
11 Hb_002835_090 0.1394315673 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
12 Hb_006925_030 0.1400253042 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
13 Hb_000107_540 0.1404192428 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
14 Hb_028960_010 0.1447040811 - - phosphoglycerate kinase, putative [Ricinus communis]
15 Hb_003687_160 0.1453652358 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_007201_010 0.1456825068 - - PREDICTED: uncharacterized protein LOC105631226 isoform X2 [Jatropha curcas]
17 Hb_000103_240 0.1491886519 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Jatropha curcas]
18 Hb_000359_160 0.1537929811 - - PREDICTED: protein CAJ1 [Jatropha curcas]
19 Hb_004374_090 0.1565888445 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
20 Hb_000992_090 0.1581341117 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]

Gene co-expression network

sample Hb_000360_010 Hb_000360_010 Hb_011900_020 Hb_011900_020 Hb_000360_010--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_000360_010--Hb_156850_020 Hb_003905_030 Hb_003905_030 Hb_000360_010--Hb_003905_030 Hb_106552_030 Hb_106552_030 Hb_000360_010--Hb_106552_030 Hb_000359_070 Hb_000359_070 Hb_000360_010--Hb_000359_070 Hb_010080_070 Hb_010080_070 Hb_000360_010--Hb_010080_070 Hb_011900_020--Hb_156850_020 Hb_011900_020--Hb_000359_070 Hb_006816_040 Hb_006816_040 Hb_011900_020--Hb_006816_040 Hb_011900_020--Hb_010080_070 Hb_002835_090 Hb_002835_090 Hb_011900_020--Hb_002835_090 Hb_156850_020--Hb_106552_030 Hb_156850_020--Hb_010080_070 Hb_028960_010 Hb_028960_010 Hb_156850_020--Hb_028960_010 Hb_012940_020 Hb_012940_020 Hb_156850_020--Hb_012940_020 Hb_156850_020--Hb_000359_070 Hb_003905_030--Hb_010080_070 Hb_003905_030--Hb_156850_020 Hb_000103_240 Hb_000103_240 Hb_003905_030--Hb_000103_240 Hb_001257_110 Hb_001257_110 Hb_003905_030--Hb_001257_110 Hb_003905_030--Hb_011900_020 Hb_106552_030--Hb_010080_070 Hb_000992_090 Hb_000992_090 Hb_106552_030--Hb_000992_090 Hb_106552_030--Hb_012940_020 Hb_068804_110 Hb_068804_110 Hb_106552_030--Hb_068804_110 Hb_001266_160 Hb_001266_160 Hb_000359_070--Hb_001266_160 Hb_000359_070--Hb_012940_020 Hb_000038_020 Hb_000038_020 Hb_000359_070--Hb_000038_020 Hb_000359_070--Hb_028960_010 Hb_001517_060 Hb_001517_060 Hb_010080_070--Hb_001517_060 Hb_000009_470 Hb_000009_470 Hb_010080_070--Hb_000009_470 Hb_010080_070--Hb_000992_090 Hb_000107_540 Hb_000107_540 Hb_010080_070--Hb_000107_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6419 15.3113 42.291 16.8773 4.15979 3.9885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.26902 7.15645 1.51952 9.17417 223.807

CAGE analysis