Hb_004162_250

Information

Type -
Description -
Location Contig4162: 213569-216564
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22660g
description hypothetical protein
nr
ID XP_006384967.1
description hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
swissprot
ID P25864
description 50S ribosomal protein L9, chloroplastic OS=Arabidopsis thaliana GN=RPL9 PE=2 SV=1
trembl
ID A9PI62
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22660g PE=2 SV=1
Gene Ontology
ID GO:0000311
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_250 0.0 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
2 Hb_005348_120 0.0726982691 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
3 Hb_000041_250 0.093242549 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
4 Hb_006915_010 0.095312663 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
5 Hb_000107_540 0.0968207298 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
6 Hb_002333_040 0.1011734515 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
7 Hb_001517_010 0.1080568145 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005523_040 0.1160822648 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
9 Hb_001691_180 0.1190253188 - - phosphoglycerate mutase, putative [Ricinus communis]
10 Hb_000017_210 0.1194899945 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
11 Hb_003171_040 0.1199771555 - - multidrug resistance pump, putative [Ricinus communis]
12 Hb_001300_240 0.1201634158 - - shikimate dehydrogenase, putative [Ricinus communis]
13 Hb_002762_050 0.1251563294 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
14 Hb_000694_080 0.1270128942 - - phosphoribulose kinase, putative [Ricinus communis]
15 Hb_000035_340 0.1277980661 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001377_210 0.1279731409 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
17 Hb_004242_200 0.1281524763 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
18 Hb_026437_020 0.1299999387 - - ring finger protein, putative [Ricinus communis]
19 Hb_006970_030 0.130227936 - - synaptotagmin, putative [Ricinus communis]
20 Hb_000638_100 0.1305423322 - - PREDICTED: histone deacetylase 14 [Jatropha curcas]

Gene co-expression network

sample Hb_004162_250 Hb_004162_250 Hb_005348_120 Hb_005348_120 Hb_004162_250--Hb_005348_120 Hb_000041_250 Hb_000041_250 Hb_004162_250--Hb_000041_250 Hb_006915_010 Hb_006915_010 Hb_004162_250--Hb_006915_010 Hb_000107_540 Hb_000107_540 Hb_004162_250--Hb_000107_540 Hb_002333_040 Hb_002333_040 Hb_004162_250--Hb_002333_040 Hb_001517_010 Hb_001517_010 Hb_004162_250--Hb_001517_010 Hb_005348_120--Hb_002333_040 Hb_005348_120--Hb_000041_250 Hb_005348_120--Hb_000107_540 Hb_005523_040 Hb_005523_040 Hb_005348_120--Hb_005523_040 Hb_006970_030 Hb_006970_030 Hb_005348_120--Hb_006970_030 Hb_000638_100 Hb_000638_100 Hb_000041_250--Hb_000638_100 Hb_000041_250--Hb_006915_010 Hb_000675_010 Hb_000675_010 Hb_000041_250--Hb_000675_010 Hb_000041_250--Hb_000107_540 Hb_006915_010--Hb_000638_100 Hb_006915_010--Hb_000107_540 Hb_000679_320 Hb_000679_320 Hb_006915_010--Hb_000679_320 Hb_001541_280 Hb_001541_280 Hb_006915_010--Hb_001541_280 Hb_000107_540--Hb_001517_010 Hb_000107_540--Hb_002333_040 Hb_001584_050 Hb_001584_050 Hb_000107_540--Hb_001584_050 Hb_000107_540--Hb_000679_320 Hb_000009_470 Hb_000009_470 Hb_002333_040--Hb_000009_470 Hb_001584_210 Hb_001584_210 Hb_002333_040--Hb_001584_210 Hb_000017_210 Hb_000017_210 Hb_002333_040--Hb_000017_210 Hb_000694_080 Hb_000694_080 Hb_002333_040--Hb_000694_080 Hb_001195_290 Hb_001195_290 Hb_001517_010--Hb_001195_290 Hb_001517_010--Hb_005523_040 Hb_134949_010 Hb_134949_010 Hb_001517_010--Hb_134949_010 Hb_001517_010--Hb_001584_210 Hb_001691_180 Hb_001691_180 Hb_001517_010--Hb_001691_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0229725 0.22637 2.43535 1.03742 0.0215343 0.0404896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.105286 0 0.0760506 0.499872 5.57766

CAGE analysis