Hb_006915_010

Information

Type -
Description -
Location Contig6915: 1171-2842
Sequence    

Annotation

kegg
ID cit:102607700
description uncharacterized LOC102607700
nr
ID XP_012073132.1
description PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
swissprot
ID A8XAA9
description Clustered mitochondria protein homolog OS=Caenorhabditis briggsae GN=clu-1 PE=3 SV=2
trembl
ID A0A067KLN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06108 PE=4 SV=1
Gene Ontology
ID GO:0005829
description eukaryotic translation initiation factor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006915_010 0.0 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
2 Hb_000638_100 0.0590721118 - - PREDICTED: histone deacetylase 14 [Jatropha curcas]
3 Hb_000041_250 0.0893890236 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
4 Hb_004162_250 0.095312663 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
5 Hb_000107_540 0.0973880992 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
6 Hb_000679_320 0.103647521 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
7 Hb_001541_280 0.104354516 - - phosphate transporter [Manihot esculenta]
8 Hb_004724_260 0.1072045755 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]
9 Hb_000092_060 0.11126423 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
10 Hb_000011_440 0.1147818358 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
11 Hb_004052_030 0.115920277 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
12 Hb_005348_120 0.1165588861 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
13 Hb_001300_240 0.1220310567 - - shikimate dehydrogenase, putative [Ricinus communis]
14 Hb_001517_010 0.1268586381 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002943_020 0.1268945067 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
16 Hb_002333_040 0.1269393973 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
17 Hb_004242_200 0.1281691142 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
18 Hb_000482_180 0.1290121328 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
19 Hb_048755_030 0.1296440836 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_002814_010 0.1304909056 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006915_010 Hb_006915_010 Hb_000638_100 Hb_000638_100 Hb_006915_010--Hb_000638_100 Hb_000041_250 Hb_000041_250 Hb_006915_010--Hb_000041_250 Hb_004162_250 Hb_004162_250 Hb_006915_010--Hb_004162_250 Hb_000107_540 Hb_000107_540 Hb_006915_010--Hb_000107_540 Hb_000679_320 Hb_000679_320 Hb_006915_010--Hb_000679_320 Hb_001541_280 Hb_001541_280 Hb_006915_010--Hb_001541_280 Hb_004724_260 Hb_004724_260 Hb_000638_100--Hb_004724_260 Hb_000638_100--Hb_000041_250 Hb_004052_030 Hb_004052_030 Hb_000638_100--Hb_004052_030 Hb_002943_020 Hb_002943_020 Hb_000638_100--Hb_002943_020 Hb_002122_070 Hb_002122_070 Hb_000638_100--Hb_002122_070 Hb_005348_120 Hb_005348_120 Hb_000041_250--Hb_005348_120 Hb_000041_250--Hb_004162_250 Hb_000675_010 Hb_000675_010 Hb_000041_250--Hb_000675_010 Hb_000041_250--Hb_000107_540 Hb_004162_250--Hb_005348_120 Hb_004162_250--Hb_000107_540 Hb_002333_040 Hb_002333_040 Hb_004162_250--Hb_002333_040 Hb_001517_010 Hb_001517_010 Hb_004162_250--Hb_001517_010 Hb_000107_540--Hb_001517_010 Hb_000107_540--Hb_002333_040 Hb_001584_050 Hb_001584_050 Hb_000107_540--Hb_001584_050 Hb_000107_540--Hb_005348_120 Hb_000107_540--Hb_000679_320 Hb_004979_050 Hb_004979_050 Hb_000679_320--Hb_004979_050 Hb_009393_140 Hb_009393_140 Hb_000679_320--Hb_009393_140 Hb_006472_040 Hb_006472_040 Hb_000679_320--Hb_006472_040 Hb_000359_160 Hb_000359_160 Hb_000679_320--Hb_000359_160 Hb_008112_020 Hb_008112_020 Hb_000679_320--Hb_008112_020 Hb_000270_640 Hb_000270_640 Hb_001541_280--Hb_000270_640 Hb_000847_030 Hb_000847_030 Hb_001541_280--Hb_000847_030 Hb_002814_010 Hb_002814_010 Hb_001541_280--Hb_002814_010 Hb_020141_030 Hb_020141_030 Hb_001541_280--Hb_020141_030 Hb_000140_460 Hb_000140_460 Hb_001541_280--Hb_000140_460 Hb_000002_300 Hb_000002_300 Hb_001541_280--Hb_000002_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.22263 3.40428 14.7341 10.9349 0.0687072 0.273313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.470742 0.123409 0.982654 4.98252 46.7877

CAGE analysis