Hb_005348_120

Information

Type -
Description -
Location Contig5348: 116433-118899
Sequence    

Annotation

kegg
ID rcu:RCOM_0711000
description chlorophyll A/B binding protein, putative
nr
ID XP_012077080.1
description PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
swissprot
ID P13869
description Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1
trembl
ID A0A067KG05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07509 PE=4 SV=1
Gene Ontology
ID GO:0009507
description chlorophyll a-b binding chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47515: 116463-118891 , PASA_asmbl_47516: 116966-117160 , PASA_asmbl_47517: 117280-117648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005348_120 0.0 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
2 Hb_004162_250 0.0726982691 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
3 Hb_002333_040 0.082741894 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
4 Hb_000041_250 0.0887964548 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
5 Hb_000107_540 0.0904701329 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
6 Hb_005523_040 0.0919285467 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
7 Hb_006970_030 0.0960630673 - - synaptotagmin, putative [Ricinus communis]
8 Hb_153258_040 0.1043184745 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
9 Hb_002762_050 0.1081574822 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
10 Hb_001517_010 0.1105691462 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000856_280 0.1126365732 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
12 Hb_000390_160 0.1163972291 - - PREDICTED: adenosine kinase [Jatropha curcas]
13 Hb_006915_010 0.1165588861 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
14 Hb_087599_010 0.1183041064 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
15 Hb_000694_080 0.1183541482 - - phosphoribulose kinase, putative [Ricinus communis]
16 Hb_006472_040 0.1190627193 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
17 Hb_000017_210 0.119336532 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
18 Hb_003777_080 0.1199462278 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
19 Hb_001195_290 0.1209592837 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
20 Hb_001691_180 0.121506834 - - phosphoglycerate mutase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005348_120 Hb_005348_120 Hb_004162_250 Hb_004162_250 Hb_005348_120--Hb_004162_250 Hb_002333_040 Hb_002333_040 Hb_005348_120--Hb_002333_040 Hb_000041_250 Hb_000041_250 Hb_005348_120--Hb_000041_250 Hb_000107_540 Hb_000107_540 Hb_005348_120--Hb_000107_540 Hb_005523_040 Hb_005523_040 Hb_005348_120--Hb_005523_040 Hb_006970_030 Hb_006970_030 Hb_005348_120--Hb_006970_030 Hb_004162_250--Hb_000041_250 Hb_006915_010 Hb_006915_010 Hb_004162_250--Hb_006915_010 Hb_004162_250--Hb_000107_540 Hb_004162_250--Hb_002333_040 Hb_001517_010 Hb_001517_010 Hb_004162_250--Hb_001517_010 Hb_002333_040--Hb_000107_540 Hb_000009_470 Hb_000009_470 Hb_002333_040--Hb_000009_470 Hb_001584_210 Hb_001584_210 Hb_002333_040--Hb_001584_210 Hb_000017_210 Hb_000017_210 Hb_002333_040--Hb_000017_210 Hb_000694_080 Hb_000694_080 Hb_002333_040--Hb_000694_080 Hb_000638_100 Hb_000638_100 Hb_000041_250--Hb_000638_100 Hb_000041_250--Hb_006915_010 Hb_000675_010 Hb_000675_010 Hb_000041_250--Hb_000675_010 Hb_000041_250--Hb_000107_540 Hb_000107_540--Hb_001517_010 Hb_001584_050 Hb_001584_050 Hb_000107_540--Hb_001584_050 Hb_000679_320 Hb_000679_320 Hb_000107_540--Hb_000679_320 Hb_005523_040--Hb_001517_010 Hb_005210_010 Hb_005210_010 Hb_005523_040--Hb_005210_010 Hb_074548_010 Hb_074548_010 Hb_005523_040--Hb_074548_010 Hb_000856_280 Hb_000856_280 Hb_005523_040--Hb_000856_280 Hb_001195_290 Hb_001195_290 Hb_005523_040--Hb_001195_290 Hb_153258_040 Hb_153258_040 Hb_006970_030--Hb_153258_040 Hb_003777_080 Hb_003777_080 Hb_006970_030--Hb_003777_080 Hb_000140_460 Hb_000140_460 Hb_006970_030--Hb_000140_460 Hb_004970_060 Hb_004970_060 Hb_006970_030--Hb_004970_060 Hb_000950_020 Hb_000950_020 Hb_006970_030--Hb_000950_020 Hb_000049_100 Hb_000049_100 Hb_006970_030--Hb_000049_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.391642 2.53432 31.056 13.9517 0.135476 1.0434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.644764 0.422682 0.210737 5.17183 65.0297

CAGE analysis