Hb_001584_050

Information

Type -
Description -
Location Contig1584: 34529-48011
Sequence    

Annotation

kegg
ID rcu:RCOM_1435490
description 2-deoxyglucose-6-phosphate phosphatase, putative (EC:5.4.2.6)
nr
ID XP_012088905.1
description PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
swissprot
ID A4IF69
description NHL repeat-containing protein 2 OS=Bos taurus GN=NHLRC2 PE=2 SV=1
trembl
ID A0A067JHQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23230 PE=4 SV=1
Gene Ontology
ID GO:0009534
description nhl repeat-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13951: 34785-37346 , PASA_asmbl_13952: 38158-38699 , PASA_asmbl_13953: 41230-44862 , PASA_asmbl_13954: 43492-43655 , PASA_asmbl_13955: 45260-46404 , PASA_asmbl_13957: 47431-48068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_050 0.0 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
2 Hb_000107_540 0.0872622132 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
3 Hb_010080_070 0.1061432182 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
4 Hb_001377_210 0.1102975403 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
5 Hb_002333_040 0.1125375065 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
6 Hb_001257_110 0.1131554659 - - PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]
7 Hb_000011_440 0.1142102599 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
8 Hb_005977_040 0.1183063545 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
9 Hb_011900_020 0.120172522 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
10 Hb_007426_070 0.1203020817 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
11 Hb_005523_040 0.1207426157 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
12 Hb_003905_030 0.1211360353 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_000092_060 0.1236224351 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
14 Hb_001517_010 0.1249830021 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005348_120 0.1269006283 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
16 Hb_000360_010 0.1280153714 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001377_060 0.1283175433 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
18 Hb_001691_170 0.1292437233 - - PREDICTED: callose synthase 12-like [Glycine max]
19 Hb_001300_160 0.129401515 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
20 Hb_000017_210 0.1294077635 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]

Gene co-expression network

sample Hb_001584_050 Hb_001584_050 Hb_000107_540 Hb_000107_540 Hb_001584_050--Hb_000107_540 Hb_010080_070 Hb_010080_070 Hb_001584_050--Hb_010080_070 Hb_001377_210 Hb_001377_210 Hb_001584_050--Hb_001377_210 Hb_002333_040 Hb_002333_040 Hb_001584_050--Hb_002333_040 Hb_001257_110 Hb_001257_110 Hb_001584_050--Hb_001257_110 Hb_000011_440 Hb_000011_440 Hb_001584_050--Hb_000011_440 Hb_001517_010 Hb_001517_010 Hb_000107_540--Hb_001517_010 Hb_000107_540--Hb_002333_040 Hb_005348_120 Hb_005348_120 Hb_000107_540--Hb_005348_120 Hb_000679_320 Hb_000679_320 Hb_000107_540--Hb_000679_320 Hb_004162_250 Hb_004162_250 Hb_000107_540--Hb_004162_250 Hb_156850_020 Hb_156850_020 Hb_010080_070--Hb_156850_020 Hb_001517_060 Hb_001517_060 Hb_010080_070--Hb_001517_060 Hb_000009_470 Hb_000009_470 Hb_010080_070--Hb_000009_470 Hb_000992_090 Hb_000992_090 Hb_010080_070--Hb_000992_090 Hb_106552_030 Hb_106552_030 Hb_010080_070--Hb_106552_030 Hb_010080_070--Hb_000107_540 Hb_000914_190 Hb_000914_190 Hb_001377_210--Hb_000914_190 Hb_001377_210--Hb_000107_540 Hb_001377_210--Hb_004162_250 Hb_000608_360 Hb_000608_360 Hb_001377_210--Hb_000608_360 Hb_006915_010 Hb_006915_010 Hb_001377_210--Hb_006915_010 Hb_002333_040--Hb_005348_120 Hb_002333_040--Hb_000009_470 Hb_001584_210 Hb_001584_210 Hb_002333_040--Hb_001584_210 Hb_000017_210 Hb_000017_210 Hb_002333_040--Hb_000017_210 Hb_000694_080 Hb_000694_080 Hb_002333_040--Hb_000694_080 Hb_001775_100 Hb_001775_100 Hb_001257_110--Hb_001775_100 Hb_005063_060 Hb_005063_060 Hb_001257_110--Hb_005063_060 Hb_074548_010 Hb_074548_010 Hb_001257_110--Hb_074548_010 Hb_002799_060 Hb_002799_060 Hb_001257_110--Hb_002799_060 Hb_005523_040 Hb_005523_040 Hb_001257_110--Hb_005523_040 Hb_003905_030 Hb_003905_030 Hb_001257_110--Hb_003905_030 Hb_000092_060 Hb_000092_060 Hb_000011_440--Hb_000092_060 Hb_004291_050 Hb_004291_050 Hb_000011_440--Hb_004291_050 Hb_002111_010 Hb_002111_010 Hb_000011_440--Hb_002111_010 Hb_000441_080 Hb_000441_080 Hb_000011_440--Hb_000441_080 Hb_001300_160 Hb_001300_160 Hb_000011_440--Hb_001300_160 Hb_000483_440 Hb_000483_440 Hb_000011_440--Hb_000483_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.241674 2.42043 9.58009 3.01033 0.389032 0.454478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.200312 0.178651 0.0402557 1.73734 27.7737

CAGE analysis