Hb_000914_190

Information

Type -
Description -
Location Contig914: 172609-187431
Sequence    

Annotation

kegg
ID rcu:RCOM_1577610
description xanthine dehydrogenase, putative (EC:1.17.3.2)
nr
ID XP_002513485.1
description xanthine dehydrogenase, putative [Ricinus communis]
swissprot
ID Q8GUQ8
description Xanthine dehydrogenase 1 OS=Arabidopsis thaliana GN=XDH1 PE=1 SV=1
trembl
ID B9RIB6
description Xanthine dehydrogenase, putative OS=Ricinus communis GN=RCOM_1577610 PE=4 SV=1
Gene Ontology
ID GO:0004855
description xanthine dehydrogenase 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000914_190 0.0 - - xanthine dehydrogenase, putative [Ricinus communis]
2 Hb_001377_210 0.0980950552 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
3 Hb_000092_060 0.1219009848 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
4 Hb_004242_200 0.1395278646 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
5 Hb_015978_090 0.1404090933 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
6 Hb_006915_010 0.1404834779 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
7 Hb_000011_440 0.1421736157 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
8 Hb_000107_540 0.1441583704 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
9 Hb_001300_160 0.1450829013 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
10 Hb_001300_240 0.1472036426 - - shikimate dehydrogenase, putative [Ricinus communis]
11 Hb_004724_260 0.1499806825 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]
12 Hb_001584_050 0.1516219551 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
13 Hb_000608_360 0.152045541 - - calreticulin, putative [Ricinus communis]
14 Hb_006970_010 0.1551782573 - - lipoxygenase, putative [Ricinus communis]
15 Hb_000041_250 0.1557248621 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
16 Hb_004162_250 0.1562509743 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
17 Hb_000638_100 0.1595175718 - - PREDICTED: histone deacetylase 14 [Jatropha curcas]
18 Hb_039435_020 0.1631033715 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
19 Hb_002122_070 0.1658011711 - - unnamed protein product [Vitis vinifera]
20 Hb_005348_120 0.1659093909 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000914_190 Hb_000914_190 Hb_001377_210 Hb_001377_210 Hb_000914_190--Hb_001377_210 Hb_000092_060 Hb_000092_060 Hb_000914_190--Hb_000092_060 Hb_004242_200 Hb_004242_200 Hb_000914_190--Hb_004242_200 Hb_015978_090 Hb_015978_090 Hb_000914_190--Hb_015978_090 Hb_006915_010 Hb_006915_010 Hb_000914_190--Hb_006915_010 Hb_000011_440 Hb_000011_440 Hb_000914_190--Hb_000011_440 Hb_000107_540 Hb_000107_540 Hb_001377_210--Hb_000107_540 Hb_001584_050 Hb_001584_050 Hb_001377_210--Hb_001584_050 Hb_004162_250 Hb_004162_250 Hb_001377_210--Hb_004162_250 Hb_000608_360 Hb_000608_360 Hb_001377_210--Hb_000608_360 Hb_001377_210--Hb_006915_010 Hb_000092_060--Hb_000011_440 Hb_001300_160 Hb_001300_160 Hb_000092_060--Hb_001300_160 Hb_000092_060--Hb_006915_010 Hb_000092_060--Hb_001584_050 Hb_004291_050 Hb_004291_050 Hb_000092_060--Hb_004291_050 Hb_010381_080 Hb_010381_080 Hb_004242_200--Hb_010381_080 Hb_001300_240 Hb_001300_240 Hb_004242_200--Hb_001300_240 Hb_114893_010 Hb_114893_010 Hb_004242_200--Hb_114893_010 Hb_006147_020 Hb_006147_020 Hb_004242_200--Hb_006147_020 Hb_043935_010 Hb_043935_010 Hb_004242_200--Hb_043935_010 Hb_004146_030 Hb_004146_030 Hb_004242_200--Hb_004146_030 Hb_008143_010 Hb_008143_010 Hb_015978_090--Hb_008143_010 Hb_000574_010 Hb_000574_010 Hb_015978_090--Hb_000574_010 Hb_015978_090--Hb_006147_020 Hb_015978_090--Hb_004242_200 Hb_015978_090--Hb_001300_240 Hb_039435_020 Hb_039435_020 Hb_015978_090--Hb_039435_020 Hb_000638_100 Hb_000638_100 Hb_006915_010--Hb_000638_100 Hb_000041_250 Hb_000041_250 Hb_006915_010--Hb_000041_250 Hb_006915_010--Hb_004162_250 Hb_006915_010--Hb_000107_540 Hb_000679_320 Hb_000679_320 Hb_006915_010--Hb_000679_320 Hb_001541_280 Hb_001541_280 Hb_006915_010--Hb_001541_280 Hb_000011_440--Hb_004291_050 Hb_002111_010 Hb_002111_010 Hb_000011_440--Hb_002111_010 Hb_000441_080 Hb_000441_080 Hb_000011_440--Hb_000441_080 Hb_000011_440--Hb_001300_160 Hb_000483_440 Hb_000483_440 Hb_000011_440--Hb_000483_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187716 0.561793 2.9525 1.02755 0.00605764 0.1855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0293579 0.0462049 0.132555 1.80066 9.28951

CAGE analysis