Hb_015978_090

Information

Type -
Description -
Location Contig15978: 42937-45211
Sequence    

Annotation

kegg
ID pop:POPTR_0002s19770g
description POPTRDRAFT_644832; hypothetical protein
nr
ID XP_006375439.1
description hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
swissprot
ID F4JKK0
description Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana GN=SUD1 PE=1 SV=1
trembl
ID U5FTE5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s11700g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14221: 42937-43218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015978_090 0.0 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
2 Hb_008143_010 0.1144220817 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
3 Hb_000574_010 0.117401583 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
4 Hb_006147_020 0.1215933116 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004242_200 0.1250692363 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
6 Hb_001300_240 0.1251695243 - - shikimate dehydrogenase, putative [Ricinus communis]
7 Hb_039435_020 0.1313972901 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
8 Hb_004146_030 0.1322303862 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_000914_190 0.1404090933 - - xanthine dehydrogenase, putative [Ricinus communis]
10 Hb_000042_310 0.142111853 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
11 Hb_002122_070 0.1439350915 - - unnamed protein product [Vitis vinifera]
12 Hb_001300_160 0.144056304 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
13 Hb_002701_060 0.1447624486 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007426_070 0.147431643 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
15 Hb_004392_030 0.1476770754 - - oxidoreductase family protein [Populus trichocarpa]
16 Hb_010381_080 0.1542509156 - - cytochrome P450, putative [Ricinus communis]
17 Hb_114893_010 0.1550761846 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
18 Hb_000675_010 0.1557847262 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
19 Hb_006053_020 0.156209907 - - CAP [Theobroma cacao]
20 Hb_000026_060 0.1562249398 - - beta-1,3-glucanase [Manihot esculenta]

Gene co-expression network

sample Hb_015978_090 Hb_015978_090 Hb_008143_010 Hb_008143_010 Hb_015978_090--Hb_008143_010 Hb_000574_010 Hb_000574_010 Hb_015978_090--Hb_000574_010 Hb_006147_020 Hb_006147_020 Hb_015978_090--Hb_006147_020 Hb_004242_200 Hb_004242_200 Hb_015978_090--Hb_004242_200 Hb_001300_240 Hb_001300_240 Hb_015978_090--Hb_001300_240 Hb_039435_020 Hb_039435_020 Hb_015978_090--Hb_039435_020 Hb_002762_050 Hb_002762_050 Hb_008143_010--Hb_002762_050 Hb_008143_010--Hb_000574_010 Hb_012807_030 Hb_012807_030 Hb_008143_010--Hb_012807_030 Hb_000675_010 Hb_000675_010 Hb_008143_010--Hb_000675_010 Hb_003536_020 Hb_003536_020 Hb_008143_010--Hb_003536_020 Hb_000483_430 Hb_000483_430 Hb_008143_010--Hb_000483_430 Hb_002701_060 Hb_002701_060 Hb_000574_010--Hb_002701_060 Hb_005575_010 Hb_005575_010 Hb_000574_010--Hb_005575_010 Hb_010678_010 Hb_010678_010 Hb_000574_010--Hb_010678_010 Hb_006053_020 Hb_006053_020 Hb_000574_010--Hb_006053_020 Hb_004392_030 Hb_004392_030 Hb_006147_020--Hb_004392_030 Hb_043935_010 Hb_043935_010 Hb_006147_020--Hb_043935_010 Hb_012539_080 Hb_012539_080 Hb_006147_020--Hb_012539_080 Hb_015817_010 Hb_015817_010 Hb_006147_020--Hb_015817_010 Hb_010381_080 Hb_010381_080 Hb_006147_020--Hb_010381_080 Hb_080791_010 Hb_080791_010 Hb_006147_020--Hb_080791_010 Hb_004242_200--Hb_010381_080 Hb_004242_200--Hb_001300_240 Hb_114893_010 Hb_114893_010 Hb_004242_200--Hb_114893_010 Hb_004242_200--Hb_006147_020 Hb_004242_200--Hb_043935_010 Hb_004146_030 Hb_004146_030 Hb_004242_200--Hb_004146_030 Hb_001300_240--Hb_114893_010 Hb_001300_240--Hb_010381_080 Hb_001300_240--Hb_039435_020 Hb_002122_070 Hb_002122_070 Hb_001300_240--Hb_002122_070 Hb_001300_240--Hb_006147_020 Hb_039435_020--Hb_002122_070 Hb_039435_020--Hb_006053_020 Hb_039435_020--Hb_114893_010 Hb_185474_020 Hb_185474_020 Hb_039435_020--Hb_185474_020 Hb_010311_020 Hb_010311_020 Hb_039435_020--Hb_010311_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0256185 0.651981 5.22482 0.989069 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0588057 0 0 2.3879 11.7174

CAGE analysis