Hb_002122_070

Information

Type -
Description -
Location Contig2122: 47523-51383
Sequence    

Annotation

kegg
ID pop:POPTR_0499s002002
description hypothetical protein
nr
ID CBI23554.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6H8E1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1458g00010 PE=4 SV=1
Gene Ontology
ID GO:0000166
description cysteine-rich receptor-like protein kinase 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22006: 47634-49952
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002122_070 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_039435_020 0.050800078 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
3 Hb_114893_010 0.0720981663 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
4 Hb_006053_020 0.0816998478 - - CAP [Theobroma cacao]
5 Hb_185474_020 0.0963280274 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
6 Hb_001300_240 0.1004804462 - - shikimate dehydrogenase, putative [Ricinus communis]
7 Hb_000675_010 0.1062050541 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
8 Hb_004242_200 0.1091354841 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
9 Hb_000164_110 0.1092926808 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
10 Hb_006970_120 0.1105928716 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004724_260 0.1118219244 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]
12 Hb_010311_020 0.1162155174 - - lrr receptor protein kinase, putative [Ricinus communis]
13 Hb_124579_020 0.1173302944 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
14 Hb_113379_010 0.118888297 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
15 Hb_002943_020 0.1204375566 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
16 Hb_000638_100 0.1208638283 - - PREDICTED: histone deacetylase 14 [Jatropha curcas]
17 Hb_000380_140 0.122503101 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
18 Hb_010381_080 0.1233098903 - - cytochrome P450, putative [Ricinus communis]
19 Hb_002701_060 0.12825405 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000041_250 0.1289190723 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]

Gene co-expression network

sample Hb_002122_070 Hb_002122_070 Hb_039435_020 Hb_039435_020 Hb_002122_070--Hb_039435_020 Hb_114893_010 Hb_114893_010 Hb_002122_070--Hb_114893_010 Hb_006053_020 Hb_006053_020 Hb_002122_070--Hb_006053_020 Hb_185474_020 Hb_185474_020 Hb_002122_070--Hb_185474_020 Hb_001300_240 Hb_001300_240 Hb_002122_070--Hb_001300_240 Hb_000675_010 Hb_000675_010 Hb_002122_070--Hb_000675_010 Hb_039435_020--Hb_006053_020 Hb_039435_020--Hb_114893_010 Hb_039435_020--Hb_001300_240 Hb_039435_020--Hb_185474_020 Hb_010311_020 Hb_010311_020 Hb_039435_020--Hb_010311_020 Hb_114893_010--Hb_001300_240 Hb_004242_200 Hb_004242_200 Hb_114893_010--Hb_004242_200 Hb_010381_080 Hb_010381_080 Hb_114893_010--Hb_010381_080 Hb_000199_090 Hb_000199_090 Hb_114893_010--Hb_000199_090 Hb_002701_060 Hb_002701_060 Hb_006053_020--Hb_002701_060 Hb_006970_120 Hb_006970_120 Hb_006053_020--Hb_006970_120 Hb_067558_010 Hb_067558_010 Hb_006053_020--Hb_067558_010 Hb_000072_110 Hb_000072_110 Hb_006053_020--Hb_000072_110 Hb_185474_020--Hb_010311_020 Hb_003142_080 Hb_003142_080 Hb_185474_020--Hb_003142_080 Hb_006198_040 Hb_006198_040 Hb_185474_020--Hb_006198_040 Hb_000380_140 Hb_000380_140 Hb_185474_020--Hb_000380_140 Hb_001652_130 Hb_001652_130 Hb_185474_020--Hb_001652_130 Hb_124579_020 Hb_124579_020 Hb_185474_020--Hb_124579_020 Hb_001300_240--Hb_004242_200 Hb_001300_240--Hb_010381_080 Hb_006147_020 Hb_006147_020 Hb_001300_240--Hb_006147_020 Hb_000041_210 Hb_000041_210 Hb_000675_010--Hb_000041_210 Hb_012389_010 Hb_012389_010 Hb_000675_010--Hb_012389_010 Hb_002943_020 Hb_002943_020 Hb_000675_010--Hb_002943_020 Hb_002073_150 Hb_002073_150 Hb_000675_010--Hb_002073_150 Hb_000483_430 Hb_000483_430 Hb_000675_010--Hb_000483_430 Hb_131876_010 Hb_131876_010 Hb_000675_010--Hb_131876_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.448122 3.11249 2.19655 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0432649 0.0170213 0 2.10529 8.42677

CAGE analysis