Hb_000199_090

Information

Type -
Description -
Location Contig199: 190591-191610
Sequence    

Annotation

kegg
ID pop:POPTR_0007s02000g
description POPTRDRAFT_562240; Tetrapyrrole-binding family protein
nr
ID XP_002309808.1
description Tetrapyrrole-binding family protein [Populus trichocarpa]
swissprot
ID Q9LX31
description Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana GN=GUN4 PE=1 SV=1
trembl
ID B9HH58
description Tetrapyrrole-binding family protein OS=Populus trichocarpa GN=POPTR_0007s02000g PE=4 SV=1
Gene Ontology
ID GO:0005488
description tetrapyrrole-binding chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19969: 190403-191268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000199_090 0.0 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
2 Hb_000627_110 0.0453904559 - - cellulose synthase, putative [Ricinus communis]
3 Hb_014510_030 0.0549308062 - - hypothetical protein VITISV_027576 [Vitis vinifera]
4 Hb_004896_030 0.0675079902 - - hypothetical protein VITISV_007475 [Vitis vinifera]
5 Hb_003073_030 0.0775253158 - - conserved hypothetical protein [Ricinus communis]
6 Hb_040245_010 0.0824896481 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
7 Hb_114893_010 0.0915672735 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
8 Hb_000415_080 0.0944603602 - - -
9 Hb_077151_010 0.0968827826 - - ankyrin repeat protein [Bruguiera gymnorhiza]
10 Hb_002111_010 0.0990068256 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
11 Hb_010381_080 0.1001352168 - - cytochrome P450, putative [Ricinus communis]
12 Hb_004242_200 0.1045333337 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
13 Hb_004459_050 0.1062978119 - - conserved hypothetical protein [Ricinus communis]
14 Hb_048755_030 0.1079947472 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_001579_050 0.1139572329 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_002740_060 0.1149919382 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
17 Hb_029386_010 0.1199991944 - - RALF-LIKE 27 family protein [Populus trichocarpa]
18 Hb_003358_030 0.1230804752 - - ankyrin-kinase, putative [Ricinus communis]
19 Hb_054865_040 0.1250787175 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
20 Hb_001300_240 0.1286295954 - - shikimate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000199_090 Hb_000199_090 Hb_000627_110 Hb_000627_110 Hb_000199_090--Hb_000627_110 Hb_014510_030 Hb_014510_030 Hb_000199_090--Hb_014510_030 Hb_004896_030 Hb_004896_030 Hb_000199_090--Hb_004896_030 Hb_003073_030 Hb_003073_030 Hb_000199_090--Hb_003073_030 Hb_040245_010 Hb_040245_010 Hb_000199_090--Hb_040245_010 Hb_114893_010 Hb_114893_010 Hb_000199_090--Hb_114893_010 Hb_000627_110--Hb_004896_030 Hb_000627_110--Hb_014510_030 Hb_000415_080 Hb_000415_080 Hb_000627_110--Hb_000415_080 Hb_000627_110--Hb_040245_010 Hb_029386_010 Hb_029386_010 Hb_000627_110--Hb_029386_010 Hb_014510_030--Hb_003073_030 Hb_014510_030--Hb_004896_030 Hb_014510_030--Hb_040245_010 Hb_014510_030--Hb_000415_080 Hb_002740_060 Hb_002740_060 Hb_004896_030--Hb_002740_060 Hb_004896_030--Hb_114893_010 Hb_004896_030--Hb_029386_010 Hb_003073_030--Hb_040245_010 Hb_003073_030--Hb_000415_080 Hb_077151_010 Hb_077151_010 Hb_003073_030--Hb_077151_010 Hb_003073_030--Hb_000627_110 Hb_040245_010--Hb_000415_080 Hb_032016_010 Hb_032016_010 Hb_040245_010--Hb_032016_010 Hb_001300_240 Hb_001300_240 Hb_114893_010--Hb_001300_240 Hb_002122_070 Hb_002122_070 Hb_114893_010--Hb_002122_070 Hb_039435_020 Hb_039435_020 Hb_114893_010--Hb_039435_020 Hb_004242_200 Hb_004242_200 Hb_114893_010--Hb_004242_200 Hb_010381_080 Hb_010381_080 Hb_114893_010--Hb_010381_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0485889 2.65981 18.1225 21.5518 0.101204 0.0380348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.098889 0 0 12.1613 102.852

CAGE analysis