Hb_039435_020

Information

Type -
Description -
Location Contig39435: 19616-27154
Sequence    

Annotation

kegg
ID rcu:RCOM_0476170
description Lysosomal Pro-X carboxypeptidase, putative (EC:3.4.16.2)
nr
ID XP_002523750.1
description Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
swissprot
ID Q5RBU7
description Lysosomal Pro-X carboxypeptidase OS=Pongo abelii GN=PRCP PE=2 SV=1
trembl
ID B9SCN1
description Lysosomal Pro-X carboxypeptidase, putative OS=Ricinus communis GN=RCOM_0476170 PE=4 SV=1
Gene Ontology
ID GO:0004180
description lysosomal pro-x carboxypeptidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039435_020 0.0 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
2 Hb_002122_070 0.050800078 - - unnamed protein product [Vitis vinifera]
3 Hb_006053_020 0.0695339349 - - CAP [Theobroma cacao]
4 Hb_114893_010 0.0723712691 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
5 Hb_001300_240 0.0952097474 - - shikimate dehydrogenase, putative [Ricinus communis]
6 Hb_185474_020 0.096330728 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
7 Hb_010311_020 0.1065876467 - - lrr receptor protein kinase, putative [Ricinus communis]
8 Hb_002701_060 0.1065891161 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006970_120 0.1091217083 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000675_010 0.1112752253 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
11 Hb_000416_010 0.111716273 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
12 Hb_004242_200 0.1125959755 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
13 Hb_000380_140 0.1234691573 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
14 Hb_010381_080 0.1246362429 - - cytochrome P450, putative [Ricinus communis]
15 Hb_002835_050 0.127023639 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
16 Hb_002943_020 0.1275220031 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
17 Hb_124579_020 0.129001256 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
18 Hb_000164_110 0.1295484561 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
19 Hb_015978_090 0.1313972901 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
20 Hb_004724_260 0.1315970444 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]

Gene co-expression network

sample Hb_039435_020 Hb_039435_020 Hb_002122_070 Hb_002122_070 Hb_039435_020--Hb_002122_070 Hb_006053_020 Hb_006053_020 Hb_039435_020--Hb_006053_020 Hb_114893_010 Hb_114893_010 Hb_039435_020--Hb_114893_010 Hb_001300_240 Hb_001300_240 Hb_039435_020--Hb_001300_240 Hb_185474_020 Hb_185474_020 Hb_039435_020--Hb_185474_020 Hb_010311_020 Hb_010311_020 Hb_039435_020--Hb_010311_020 Hb_002122_070--Hb_114893_010 Hb_002122_070--Hb_006053_020 Hb_002122_070--Hb_185474_020 Hb_002122_070--Hb_001300_240 Hb_000675_010 Hb_000675_010 Hb_002122_070--Hb_000675_010 Hb_002701_060 Hb_002701_060 Hb_006053_020--Hb_002701_060 Hb_006970_120 Hb_006970_120 Hb_006053_020--Hb_006970_120 Hb_067558_010 Hb_067558_010 Hb_006053_020--Hb_067558_010 Hb_000072_110 Hb_000072_110 Hb_006053_020--Hb_000072_110 Hb_114893_010--Hb_001300_240 Hb_004242_200 Hb_004242_200 Hb_114893_010--Hb_004242_200 Hb_010381_080 Hb_010381_080 Hb_114893_010--Hb_010381_080 Hb_000199_090 Hb_000199_090 Hb_114893_010--Hb_000199_090 Hb_001300_240--Hb_004242_200 Hb_001300_240--Hb_010381_080 Hb_006147_020 Hb_006147_020 Hb_001300_240--Hb_006147_020 Hb_185474_020--Hb_010311_020 Hb_003142_080 Hb_003142_080 Hb_185474_020--Hb_003142_080 Hb_006198_040 Hb_006198_040 Hb_185474_020--Hb_006198_040 Hb_000380_140 Hb_000380_140 Hb_185474_020--Hb_000380_140 Hb_001652_130 Hb_001652_130 Hb_185474_020--Hb_001652_130 Hb_124579_020 Hb_124579_020 Hb_185474_020--Hb_124579_020 Hb_000416_010 Hb_000416_010 Hb_010311_020--Hb_000416_010 Hb_010311_020--Hb_124579_020 Hb_010311_020--Hb_000380_140 Hb_002635_010 Hb_002635_010 Hb_010311_020--Hb_002635_010 Hb_010311_020--Hb_006198_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0475697 0.327307 0.197786 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.242551 0.882143

CAGE analysis