Hb_002635_010

Information

Type -
Description -
Location Contig2635: 73386-75767
Sequence    

Annotation

kegg
ID rcu:RCOM_0640480
description bacteriochlorophyll synthase, putative
nr
ID BAH10640.1
description homogentisate phytyl transferase [Hevea brasiliensis]
swissprot
ID Q0D576
description Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2
trembl
ID B7X937
description Homogentisate phytyl transferase OS=Hevea brasiliensis GN=hpt PE=2 SV=1
Gene Ontology
ID GO:0016021
description homogentisate phytyltransferase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27500: 72284-94931
cDNA
(Sanger)
(ID:Location)		 005_H05.ab1: 72304-75713

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002635_010 0.0 - - homogentisate phytyl transferase [Hevea brasiliensis]
2 Hb_000130_480 0.0683800642 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
3 Hb_000380_140 0.0722536836 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
4 Hb_004607_160 0.0820229686 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
5 Hb_124579_020 0.0865748562 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
6 Hb_007850_110 0.0904511284 - - MADS-box transcription factor 3 [Hevea brasiliensis]
7 Hb_003142_080 0.0923275548 - - receptor serine/threonine kinase, putative [Ricinus communis]
8 Hb_010311_020 0.0923520823 - - lrr receptor protein kinase, putative [Ricinus communis]
9 Hb_006198_040 0.0948877542 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000836_030 0.0997073068 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
11 Hb_185474_020 0.1003939748 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
12 Hb_006970_120 0.1106317641 - - conserved hypothetical protein [Ricinus communis]
13 Hb_167211_010 0.1171298588 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
14 Hb_004946_010 0.1184242446 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
15 Hb_001278_090 0.1215082344 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
16 Hb_002601_140 0.1219909964 - - signal transducer, putative [Ricinus communis]
17 Hb_017098_050 0.1221784034 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
18 Hb_020805_070 0.1270924641 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
19 Hb_000776_020 0.1273014738 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
20 Hb_029223_010 0.1278167335 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]

Gene co-expression network

sample Hb_002635_010 Hb_002635_010 Hb_000130_480 Hb_000130_480 Hb_002635_010--Hb_000130_480 Hb_000380_140 Hb_000380_140 Hb_002635_010--Hb_000380_140 Hb_004607_160 Hb_004607_160 Hb_002635_010--Hb_004607_160 Hb_124579_020 Hb_124579_020 Hb_002635_010--Hb_124579_020 Hb_007850_110 Hb_007850_110 Hb_002635_010--Hb_007850_110 Hb_003142_080 Hb_003142_080 Hb_002635_010--Hb_003142_080 Hb_006198_040 Hb_006198_040 Hb_000130_480--Hb_006198_040 Hb_000130_480--Hb_004607_160 Hb_000130_480--Hb_124579_020 Hb_000130_480--Hb_003142_080 Hb_000836_030 Hb_000836_030 Hb_000130_480--Hb_000836_030 Hb_006970_120 Hb_006970_120 Hb_000380_140--Hb_006970_120 Hb_010311_020 Hb_010311_020 Hb_000380_140--Hb_010311_020 Hb_004946_010 Hb_004946_010 Hb_000380_140--Hb_004946_010 Hb_185474_020 Hb_185474_020 Hb_000380_140--Hb_185474_020 Hb_000380_140--Hb_124579_020 Hb_004607_160--Hb_000836_030 Hb_144449_010 Hb_144449_010 Hb_004607_160--Hb_144449_010 Hb_005332_050 Hb_005332_050 Hb_004607_160--Hb_005332_050 Hb_004607_160--Hb_007850_110 Hb_124579_020--Hb_010311_020 Hb_000416_010 Hb_000416_010 Hb_124579_020--Hb_000416_010 Hb_124579_020--Hb_185474_020 Hb_124579_020--Hb_003142_080 Hb_006469_090 Hb_006469_090 Hb_007850_110--Hb_006469_090 Hb_017098_050 Hb_017098_050 Hb_007850_110--Hb_017098_050 Hb_001109_130 Hb_001109_130 Hb_007850_110--Hb_001109_130 Hb_007850_110--Hb_000130_480 Hb_003142_080--Hb_006198_040 Hb_003142_080--Hb_185474_020 Hb_000033_010 Hb_000033_010 Hb_003142_080--Hb_000033_010 Hb_029223_010 Hb_029223_010 Hb_003142_080--Hb_029223_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.22763 5.50999 13.6337 14.3676 0.0982593 0.154764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0805846 0 0 13.0152 28.8278

CAGE analysis