Hb_000130_480

Information

Type -
Description -
Location Contig130: 431048-433279
Sequence    

Annotation

kegg
ID rcu:RCOM_0649410
description hypothetical protein
nr
ID XP_012076246.1
description PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LF51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15297 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_480 0.0 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
2 Hb_002635_010 0.0683800642 - - homogentisate phytyl transferase [Hevea brasiliensis]
3 Hb_006198_040 0.0781817302 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004607_160 0.0799941186 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
5 Hb_124579_020 0.0846870324 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
6 Hb_003142_080 0.0936856789 - - receptor serine/threonine kinase, putative [Ricinus communis]
7 Hb_000836_030 0.0955864982 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
8 Hb_007850_110 0.0972255645 - - MADS-box transcription factor 3 [Hevea brasiliensis]
9 Hb_000033_010 0.1070067756 - - Protein MLO, putative [Ricinus communis]
10 Hb_000380_140 0.1102738168 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
11 Hb_005332_050 0.113653712 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
12 Hb_001278_090 0.1138124298 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
13 Hb_010311_020 0.1155342614 - - lrr receptor protein kinase, putative [Ricinus communis]
14 Hb_167211_010 0.1167757511 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
15 Hb_000917_210 0.1176565892 - - conserved hypothetical protein [Ricinus communis]
16 Hb_185474_020 0.1190129001 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
17 Hb_082550_010 0.1190648202 - - hypothetical protein CISIN_1g0081081mg, partial [Citrus sinensis]
18 Hb_029223_010 0.1251317923 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
19 Hb_001883_010 0.1268109826 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
20 Hb_000776_020 0.127425942 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]

Gene co-expression network

sample Hb_000130_480 Hb_000130_480 Hb_002635_010 Hb_002635_010 Hb_000130_480--Hb_002635_010 Hb_006198_040 Hb_006198_040 Hb_000130_480--Hb_006198_040 Hb_004607_160 Hb_004607_160 Hb_000130_480--Hb_004607_160 Hb_124579_020 Hb_124579_020 Hb_000130_480--Hb_124579_020 Hb_003142_080 Hb_003142_080 Hb_000130_480--Hb_003142_080 Hb_000836_030 Hb_000836_030 Hb_000130_480--Hb_000836_030 Hb_000380_140 Hb_000380_140 Hb_002635_010--Hb_000380_140 Hb_002635_010--Hb_004607_160 Hb_002635_010--Hb_124579_020 Hb_007850_110 Hb_007850_110 Hb_002635_010--Hb_007850_110 Hb_002635_010--Hb_003142_080 Hb_006198_040--Hb_003142_080 Hb_185474_020 Hb_185474_020 Hb_006198_040--Hb_185474_020 Hb_000033_010 Hb_000033_010 Hb_006198_040--Hb_000033_010 Hb_006198_040--Hb_124579_020 Hb_006198_040--Hb_000836_030 Hb_004607_160--Hb_000836_030 Hb_144449_010 Hb_144449_010 Hb_004607_160--Hb_144449_010 Hb_005332_050 Hb_005332_050 Hb_004607_160--Hb_005332_050 Hb_004607_160--Hb_007850_110 Hb_010311_020 Hb_010311_020 Hb_124579_020--Hb_010311_020 Hb_000416_010 Hb_000416_010 Hb_124579_020--Hb_000416_010 Hb_124579_020--Hb_185474_020 Hb_124579_020--Hb_003142_080 Hb_003142_080--Hb_185474_020 Hb_003142_080--Hb_000033_010 Hb_029223_010 Hb_029223_010 Hb_003142_080--Hb_029223_010 Hb_000784_060 Hb_000784_060 Hb_000836_030--Hb_000784_060 Hb_002095_020 Hb_002095_020 Hb_000836_030--Hb_002095_020 Hb_001369_390 Hb_001369_390 Hb_000836_030--Hb_001369_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.36864 9.30037 17.6123 21.6736 0.224813 0.0649406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.55987 0.346138 0.20943 18.9852 43.5239

CAGE analysis