Hb_000072_110

Information

Type -
Description -
Location Contig72: 255452-259859
Sequence    

Annotation

kegg
ID pop:POPTR_0006s00580g
description POPTRDRAFT_560089; hypothetical protein
nr
ID XP_012075005.1
description PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
swissprot
ID Q9SW11
description U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2
trembl
ID A0A067KUJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08962 PE=4 SV=1
Gene Ontology
ID GO:0016787
description u-box domain-containing protein 35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55580: 255556-259833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_110 0.0 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
2 Hb_002701_060 0.0848655768 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002701_170 0.0952785481 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
4 Hb_004324_320 0.0999676654 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
5 Hb_170023_010 0.1053471263 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
6 Hb_006970_120 0.1077613097 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006053_020 0.1083959291 - - CAP [Theobroma cacao]
8 Hb_000164_110 0.1239694839 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
9 Hb_000365_440 0.1242078568 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
10 Hb_000087_120 0.1250154261 - - AMP dependent CoA ligase, putative [Ricinus communis]
11 Hb_000147_020 0.1263284716 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
12 Hb_024570_030 0.1265502877 - - cytochrome P450, putative [Ricinus communis]
13 Hb_000560_060 0.1269017878 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
14 Hb_000380_140 0.1283509102 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
15 Hb_006789_020 0.1379264447 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase-like 22 [Camelina sativa]
16 Hb_002122_070 0.1384834549 - - unnamed protein product [Vitis vinifera]
17 Hb_039435_020 0.1389286979 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
18 Hb_010311_020 0.1420486932 - - lrr receptor protein kinase, putative [Ricinus communis]
19 Hb_124579_020 0.1431355575 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
20 Hb_019278_010 0.1435165776 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]

Gene co-expression network

sample Hb_000072_110 Hb_000072_110 Hb_002701_060 Hb_002701_060 Hb_000072_110--Hb_002701_060 Hb_002701_170 Hb_002701_170 Hb_000072_110--Hb_002701_170 Hb_004324_320 Hb_004324_320 Hb_000072_110--Hb_004324_320 Hb_170023_010 Hb_170023_010 Hb_000072_110--Hb_170023_010 Hb_006970_120 Hb_006970_120 Hb_000072_110--Hb_006970_120 Hb_006053_020 Hb_006053_020 Hb_000072_110--Hb_006053_020 Hb_002701_060--Hb_006053_020 Hb_002701_060--Hb_002701_170 Hb_000574_010 Hb_000574_010 Hb_002701_060--Hb_000574_010 Hb_002701_060--Hb_006970_120 Hb_039435_020 Hb_039435_020 Hb_002701_060--Hb_039435_020 Hb_000560_060 Hb_000560_060 Hb_002701_170--Hb_000560_060 Hb_006789_020 Hb_006789_020 Hb_002701_170--Hb_006789_020 Hb_010678_010 Hb_010678_010 Hb_002701_170--Hb_010678_010 Hb_002151_150 Hb_002151_150 Hb_002701_170--Hb_002151_150 Hb_004324_320--Hb_170023_010 Hb_000147_020 Hb_000147_020 Hb_004324_320--Hb_000147_020 Hb_000260_750 Hb_000260_750 Hb_004324_320--Hb_000260_750 Hb_000880_040 Hb_000880_040 Hb_004324_320--Hb_000880_040 Hb_000365_440 Hb_000365_440 Hb_004324_320--Hb_000365_440 Hb_019278_010 Hb_019278_010 Hb_170023_010--Hb_019278_010 Hb_170023_010--Hb_000365_440 Hb_170023_010--Hb_000880_040 Hb_000087_120 Hb_000087_120 Hb_170023_010--Hb_000087_120 Hb_001244_070 Hb_001244_070 Hb_170023_010--Hb_001244_070 Hb_000380_140 Hb_000380_140 Hb_006970_120--Hb_000380_140 Hb_000164_110 Hb_000164_110 Hb_006970_120--Hb_000164_110 Hb_006970_120--Hb_000147_020 Hb_004946_010 Hb_004946_010 Hb_006970_120--Hb_004946_010 Hb_006970_120--Hb_006053_020 Hb_006053_020--Hb_039435_020 Hb_002122_070 Hb_002122_070 Hb_006053_020--Hb_002122_070 Hb_067558_010 Hb_067558_010 Hb_006053_020--Hb_067558_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.20207 12.5575 5.84014 0 0.0404896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.315858 0.0414024 0.0760506 10.7639 19.6063

CAGE analysis