Hb_002701_170

Information

Type -
Description -
Location Contig2701: 159847-163196
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13340g
description brassinosteroid-6-oxidase family protein
nr
ID XP_012088057.1
description PREDICTED: cytochrome P450 85A [Jatropha curcas]
swissprot
ID Q69F95
description Cytochrome P450 85A OS=Phaseolus vulgaris GN=BA13 PE=3 SV=2
trembl
ID B9N6N1
description Brassinosteroid-6-oxidase family protein OS=Populus trichocarpa GN=POPTR_0017s13340g PE=4 SV=1
Gene Ontology
ID GO:0004497
description cytochrome p450 85a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28336: 160999-161909
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_170 0.0 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
2 Hb_002701_060 0.0815566338 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000560_060 0.0869775246 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
4 Hb_006789_020 0.0913860382 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase-like 22 [Camelina sativa]
5 Hb_010678_010 0.0937613777 - - PREDICTED: alpha-glucosidase-like [Jatropha curcas]
6 Hb_000072_110 0.0952785481 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
7 Hb_002151_150 0.0953365122 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
8 Hb_005050_030 0.1052379449 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
9 Hb_000365_440 0.1109832194 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
10 Hb_006053_020 0.1136845796 - - CAP [Theobroma cacao]
11 Hb_000574_010 0.123317113 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
12 Hb_024570_030 0.1269174214 - - cytochrome P450, putative [Ricinus communis]
13 Hb_119443_010 0.1352797636 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
14 Hb_023732_080 0.1366560465 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
15 Hb_176680_010 0.1377320332 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
16 Hb_004709_030 0.1427713803 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
17 Hb_068804_030 0.1430366722 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
18 Hb_170023_010 0.1443320244 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
19 Hb_004324_320 0.1466511602 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
20 Hb_006970_120 0.1474238724 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002701_170 Hb_002701_170 Hb_002701_060 Hb_002701_060 Hb_002701_170--Hb_002701_060 Hb_000560_060 Hb_000560_060 Hb_002701_170--Hb_000560_060 Hb_006789_020 Hb_006789_020 Hb_002701_170--Hb_006789_020 Hb_010678_010 Hb_010678_010 Hb_002701_170--Hb_010678_010 Hb_000072_110 Hb_000072_110 Hb_002701_170--Hb_000072_110 Hb_002151_150 Hb_002151_150 Hb_002701_170--Hb_002151_150 Hb_006053_020 Hb_006053_020 Hb_002701_060--Hb_006053_020 Hb_002701_060--Hb_000072_110 Hb_000574_010 Hb_000574_010 Hb_002701_060--Hb_000574_010 Hb_006970_120 Hb_006970_120 Hb_002701_060--Hb_006970_120 Hb_039435_020 Hb_039435_020 Hb_002701_060--Hb_039435_020 Hb_000560_060--Hb_010678_010 Hb_000560_060--Hb_002151_150 Hb_000560_060--Hb_000072_110 Hb_005050_030 Hb_005050_030 Hb_000560_060--Hb_005050_030 Hb_000560_060--Hb_002701_060 Hb_068804_030 Hb_068804_030 Hb_006789_020--Hb_068804_030 Hb_006789_020--Hb_002151_150 Hb_006789_020--Hb_002701_060 Hb_006789_020--Hb_010678_010 Hb_026419_010 Hb_026419_010 Hb_006789_020--Hb_026419_010 Hb_010678_010--Hb_000574_010 Hb_005622_030 Hb_005622_030 Hb_010678_010--Hb_005622_030 Hb_010678_010--Hb_002151_150 Hb_004837_250 Hb_004837_250 Hb_010678_010--Hb_004837_250 Hb_004324_320 Hb_004324_320 Hb_000072_110--Hb_004324_320 Hb_170023_010 Hb_170023_010 Hb_000072_110--Hb_170023_010 Hb_000072_110--Hb_006970_120 Hb_000072_110--Hb_006053_020 Hb_002151_150--Hb_005050_030 Hb_040718_010 Hb_040718_010 Hb_002151_150--Hb_040718_010 Hb_000365_440 Hb_000365_440 Hb_002151_150--Hb_000365_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.183669 8.81967 2.78161 0 0.0204785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0531909 0 0 5.60287 11.0473

CAGE analysis