Hb_004837_250

Information

Type -
Description -
Location Contig4837: 201035-203567
Sequence    

Annotation

kegg
ID rcu:RCOM_1577780
description hypothetical protein
nr
ID XP_002513492.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1577780 PE=4 SV=1
Gene Ontology
ID GO:0005840
description myosin-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44895: 200933-201180 , PASA_asmbl_44896: 201831-202412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010678_010 0.1236154674 - - PREDICTED: alpha-glucosidase-like [Jatropha curcas]
3 Hb_176680_010 0.1315843724 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
4 Hb_000574_010 0.1475279521 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
5 Hb_023732_080 0.148567089 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
6 Hb_002701_170 0.1517686144 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
7 Hb_006938_060 0.1522821158 - - nutrient reservoir, putative [Ricinus communis]
8 Hb_004392_030 0.1536033821 - - oxidoreductase family protein [Populus trichocarpa]
9 Hb_040718_010 0.1548396765 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
10 Hb_002151_150 0.1550498553 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
11 Hb_001409_080 0.155829174 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Populus euphratica]
12 Hb_012807_030 0.1637872099 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
13 Hb_012539_080 0.1638051718 - - Polyprotein, putative [Solanum demissum]
14 Hb_000340_270 0.1645523239 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
15 Hb_000560_060 0.1678220708 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
16 Hb_002701_060 0.170162455 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006789_020 0.1712473256 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase-like 22 [Camelina sativa]
18 Hb_006147_020 0.1720035628 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004374_020 0.1725151486 - - PREDICTED: mitogen-activated protein kinase homolog MMK2-like [Jatropha curcas]
20 Hb_005050_030 0.1725162399 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004837_250 Hb_004837_250 Hb_010678_010 Hb_010678_010 Hb_004837_250--Hb_010678_010 Hb_176680_010 Hb_176680_010 Hb_004837_250--Hb_176680_010 Hb_000574_010 Hb_000574_010 Hb_004837_250--Hb_000574_010 Hb_023732_080 Hb_023732_080 Hb_004837_250--Hb_023732_080 Hb_002701_170 Hb_002701_170 Hb_004837_250--Hb_002701_170 Hb_006938_060 Hb_006938_060 Hb_004837_250--Hb_006938_060 Hb_010678_010--Hb_002701_170 Hb_000560_060 Hb_000560_060 Hb_010678_010--Hb_000560_060 Hb_010678_010--Hb_000574_010 Hb_005622_030 Hb_005622_030 Hb_010678_010--Hb_005622_030 Hb_002151_150 Hb_002151_150 Hb_010678_010--Hb_002151_150 Hb_001409_080 Hb_001409_080 Hb_176680_010--Hb_001409_080 Hb_176680_010--Hb_006938_060 Hb_119443_010 Hb_119443_010 Hb_176680_010--Hb_119443_010 Hb_067558_010 Hb_067558_010 Hb_176680_010--Hb_067558_010 Hb_012539_080 Hb_012539_080 Hb_176680_010--Hb_012539_080 Hb_040718_010 Hb_040718_010 Hb_176680_010--Hb_040718_010 Hb_002701_060 Hb_002701_060 Hb_000574_010--Hb_002701_060 Hb_008143_010 Hb_008143_010 Hb_000574_010--Hb_008143_010 Hb_005575_010 Hb_005575_010 Hb_000574_010--Hb_005575_010 Hb_006053_020 Hb_006053_020 Hb_000574_010--Hb_006053_020 Hb_015978_090 Hb_015978_090 Hb_000574_010--Hb_015978_090 Hb_005181_190 Hb_005181_190 Hb_023732_080--Hb_005181_190 Hb_023732_080--Hb_067558_010 Hb_005050_030 Hb_005050_030 Hb_023732_080--Hb_005050_030 Hb_000947_010 Hb_000947_010 Hb_023732_080--Hb_000947_010 Hb_004116_050 Hb_004116_050 Hb_023732_080--Hb_004116_050 Hb_000365_440 Hb_000365_440 Hb_023732_080--Hb_000365_440 Hb_002701_170--Hb_002701_060 Hb_002701_170--Hb_000560_060 Hb_006789_020 Hb_006789_020 Hb_002701_170--Hb_006789_020 Hb_000072_110 Hb_000072_110 Hb_002701_170--Hb_000072_110 Hb_002701_170--Hb_002151_150 Hb_006938_060--Hb_040718_010 Hb_006938_060--Hb_001409_080 Hb_174168_010 Hb_174168_010 Hb_006938_060--Hb_174168_010 Hb_000866_060 Hb_000866_060 Hb_006938_060--Hb_000866_060 Hb_006267_040 Hb_006267_040 Hb_006938_060--Hb_006267_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.607847 0.128501 0.026559 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.198992 0.746164

CAGE analysis