Hb_000560_060

Information

Type -
Description -
Location Contig560: 93793-94931
Sequence    

Annotation

kegg
ID pxb:103957725
description chitinase 5-like
nr
ID XP_012065143.1
description PREDICTED: endochitinase PR4-like [Jatropha curcas]
swissprot
ID Q7Y1Z0
description Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1
trembl
ID A0A067LJ50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05736 PE=4 SV=1
Gene Ontology
ID GO:0004568
description chitinase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48753: 94072-94906
cDNA
(Sanger)
(ID:Location)		 005_I15.ab1: 94074-94906 , 012_D21.ab1: 94152-94906 , 012_F03.ab1: 94081-94906 , 018_F23.ab1: 94096-94908 , 046_M19.ab1: 94096-94906 , 049_B19.ab1: 94105-94906

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000560_060 0.0 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
2 Hb_002701_170 0.0869775246 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
3 Hb_010678_010 0.1083132227 - - PREDICTED: alpha-glucosidase-like [Jatropha curcas]
4 Hb_002151_150 0.12078642 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
5 Hb_000072_110 0.1269017878 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
6 Hb_005050_030 0.1315991136 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
7 Hb_002701_060 0.1392917317 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006789_020 0.1394829639 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase-like 22 [Camelina sativa]
9 Hb_138229_010 0.1418123372 - - hypothetical protein JCGZ_05736 [Jatropha curcas]
10 Hb_024570_030 0.1434237751 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000365_440 0.1479358596 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
12 Hb_000574_010 0.1483220791 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
13 Hb_005622_030 0.1643518728 - - transferase, putative [Ricinus communis]
14 Hb_068804_030 0.1669092634 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
15 Hb_040718_010 0.1670559805 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
16 Hb_004837_250 0.1678220708 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004709_030 0.1686283339 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
18 Hb_023732_080 0.1717109265 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
19 Hb_004374_020 0.1745754959 - - PREDICTED: mitogen-activated protein kinase homolog MMK2-like [Jatropha curcas]
20 Hb_039435_010 0.1752394496 - - hypothetical protein SORBIDRAFT_10g025530 [Sorghum bicolor]

Gene co-expression network

sample Hb_000560_060 Hb_000560_060 Hb_002701_170 Hb_002701_170 Hb_000560_060--Hb_002701_170 Hb_010678_010 Hb_010678_010 Hb_000560_060--Hb_010678_010 Hb_002151_150 Hb_002151_150 Hb_000560_060--Hb_002151_150 Hb_000072_110 Hb_000072_110 Hb_000560_060--Hb_000072_110 Hb_005050_030 Hb_005050_030 Hb_000560_060--Hb_005050_030 Hb_002701_060 Hb_002701_060 Hb_000560_060--Hb_002701_060 Hb_002701_170--Hb_002701_060 Hb_006789_020 Hb_006789_020 Hb_002701_170--Hb_006789_020 Hb_002701_170--Hb_010678_010 Hb_002701_170--Hb_000072_110 Hb_002701_170--Hb_002151_150 Hb_000574_010 Hb_000574_010 Hb_010678_010--Hb_000574_010 Hb_005622_030 Hb_005622_030 Hb_010678_010--Hb_005622_030 Hb_010678_010--Hb_002151_150 Hb_004837_250 Hb_004837_250 Hb_010678_010--Hb_004837_250 Hb_002151_150--Hb_005050_030 Hb_040718_010 Hb_040718_010 Hb_002151_150--Hb_040718_010 Hb_000365_440 Hb_000365_440 Hb_002151_150--Hb_000365_440 Hb_002151_150--Hb_006789_020 Hb_000072_110--Hb_002701_060 Hb_004324_320 Hb_004324_320 Hb_000072_110--Hb_004324_320 Hb_170023_010 Hb_170023_010 Hb_000072_110--Hb_170023_010 Hb_006970_120 Hb_006970_120 Hb_000072_110--Hb_006970_120 Hb_006053_020 Hb_006053_020 Hb_000072_110--Hb_006053_020 Hb_005050_030--Hb_040718_010 Hb_005050_030--Hb_000365_440 Hb_005050_030--Hb_002701_170 Hb_000947_010 Hb_000947_010 Hb_005050_030--Hb_000947_010 Hb_009693_010 Hb_009693_010 Hb_005050_030--Hb_009693_010 Hb_002701_060--Hb_006053_020 Hb_002701_060--Hb_000574_010 Hb_002701_060--Hb_006970_120 Hb_039435_020 Hb_039435_020 Hb_002701_060--Hb_039435_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.39937 29.6588 6.67401 0.0210554 0.183006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.720651 0.453449 0.139489 16.6836 30.6268

CAGE analysis