Hb_000365_440

Information

Type -
Description -
Location Contig365: 428533-429994
Sequence    

Annotation

kegg
ID rcu:RCOM_0126240
description Acid phosphatase 1 precursor, putative (EC:3.1.3.2)
nr
ID XP_002531803.1
description Acid phosphatase 1 precursor, putative [Ricinus communis]
swissprot
ID P27061
description Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1
trembl
ID B9T0N4
description Acid phosphatase 1, putative OS=Ricinus communis GN=RCOM_0126240 PE=4 SV=1
Gene Ontology
ID GO:0016787
description acid phosphatase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37621: 428535-429814 , PASA_asmbl_37622: 429886-430033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_440 0.0 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
2 Hb_004709_030 0.0736732626 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
3 Hb_000880_040 0.079539945 - - -
4 Hb_001244_070 0.0834484029 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
5 Hb_170023_010 0.0839721019 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
6 Hb_005050_030 0.0896218866 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
7 Hb_019278_010 0.0989246877 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
8 Hb_009693_010 0.1034412257 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
9 Hb_004324_320 0.1079798955 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
10 Hb_002701_170 0.1109832194 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
11 Hb_002151_150 0.1114685036 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
12 Hb_002851_070 0.1156108681 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
13 Hb_000260_750 0.1197167214 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
14 Hb_001186_120 0.1229663782 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
15 Hb_000072_110 0.1242078568 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
16 Hb_000087_120 0.1257499367 - - AMP dependent CoA ligase, putative [Ricinus communis]
17 Hb_002701_060 0.1310847224 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000152_120 0.1315718214 - - alpha-l-fucosidase, putative [Ricinus communis]
19 Hb_026419_010 0.1335531416 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
20 Hb_023732_080 0.134936543 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000365_440 Hb_000365_440 Hb_004709_030 Hb_004709_030 Hb_000365_440--Hb_004709_030 Hb_000880_040 Hb_000880_040 Hb_000365_440--Hb_000880_040 Hb_001244_070 Hb_001244_070 Hb_000365_440--Hb_001244_070 Hb_170023_010 Hb_170023_010 Hb_000365_440--Hb_170023_010 Hb_005050_030 Hb_005050_030 Hb_000365_440--Hb_005050_030 Hb_019278_010 Hb_019278_010 Hb_000365_440--Hb_019278_010 Hb_004709_030--Hb_019278_010 Hb_000087_120 Hb_000087_120 Hb_004709_030--Hb_000087_120 Hb_001186_120 Hb_001186_120 Hb_004709_030--Hb_001186_120 Hb_026419_010 Hb_026419_010 Hb_004709_030--Hb_026419_010 Hb_004709_030--Hb_170023_010 Hb_009693_010 Hb_009693_010 Hb_000880_040--Hb_009693_010 Hb_000260_750 Hb_000260_750 Hb_000880_040--Hb_000260_750 Hb_000880_040--Hb_001244_070 Hb_000880_040--Hb_170023_010 Hb_002851_070 Hb_002851_070 Hb_000880_040--Hb_002851_070 Hb_000152_120 Hb_000152_120 Hb_001244_070--Hb_000152_120 Hb_001405_040 Hb_001405_040 Hb_001244_070--Hb_001405_040 Hb_004116_050 Hb_004116_050 Hb_001244_070--Hb_004116_050 Hb_020805_070 Hb_020805_070 Hb_001244_070--Hb_020805_070 Hb_004324_320 Hb_004324_320 Hb_170023_010--Hb_004324_320 Hb_170023_010--Hb_019278_010 Hb_170023_010--Hb_000087_120 Hb_170023_010--Hb_001244_070 Hb_002151_150 Hb_002151_150 Hb_005050_030--Hb_002151_150 Hb_040718_010 Hb_040718_010 Hb_005050_030--Hb_040718_010 Hb_002701_170 Hb_002701_170 Hb_005050_030--Hb_002701_170 Hb_000947_010 Hb_000947_010 Hb_005050_030--Hb_000947_010 Hb_005050_030--Hb_009693_010 Hb_019278_010--Hb_000087_120 Hb_000337_030 Hb_000337_030 Hb_019278_010--Hb_000337_030 Hb_002379_060 Hb_002379_060 Hb_019278_010--Hb_002379_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0857021 1.64093 0.690364 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.18013 1.44266

CAGE analysis