Hb_019278_010

Information

Type -
Description -
Location Contig19278: 4471-9314
Sequence    

Annotation

kegg
ID rcu:RCOM_0803380
description hypothetical protein
nr
ID XP_012077462.1
description PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KR10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07795 PE=4 SV=1
Gene Ontology
ID GO:0010468
description golgin subfamily a member 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019278_010 0.0 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
2 Hb_170023_010 0.0747873896 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
3 Hb_000087_120 0.0772868602 - - AMP dependent CoA ligase, putative [Ricinus communis]
4 Hb_000337_030 0.087520422 - - amino acid transporter, putative [Ricinus communis]
5 Hb_004709_030 0.0907420987 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
6 Hb_000365_440 0.0989246877 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
7 Hb_002379_060 0.1034817284 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
8 Hb_001244_070 0.1154886732 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
9 Hb_004324_320 0.1164875433 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
10 Hb_026419_010 0.116544871 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
11 Hb_000215_130 0.1176264289 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
12 Hb_000880_040 0.1235409038 - - -
13 Hb_004943_010 0.1239371865 - - cationic amino acid transporter, putative [Ricinus communis]
14 Hb_000836_260 0.128766445 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
15 Hb_000152_120 0.1289994919 - - alpha-l-fucosidase, putative [Ricinus communis]
16 Hb_000847_120 0.1299797792 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
17 Hb_001186_120 0.1323145013 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
18 Hb_000226_110 0.1405055338 - - -
19 Hb_007850_110 0.1422427736 - - MADS-box transcription factor 3 [Hevea brasiliensis]
20 Hb_060152_010 0.142535612 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]

Gene co-expression network

sample Hb_019278_010 Hb_019278_010 Hb_170023_010 Hb_170023_010 Hb_019278_010--Hb_170023_010 Hb_000087_120 Hb_000087_120 Hb_019278_010--Hb_000087_120 Hb_000337_030 Hb_000337_030 Hb_019278_010--Hb_000337_030 Hb_004709_030 Hb_004709_030 Hb_019278_010--Hb_004709_030 Hb_000365_440 Hb_000365_440 Hb_019278_010--Hb_000365_440 Hb_002379_060 Hb_002379_060 Hb_019278_010--Hb_002379_060 Hb_004324_320 Hb_004324_320 Hb_170023_010--Hb_004324_320 Hb_170023_010--Hb_000365_440 Hb_000880_040 Hb_000880_040 Hb_170023_010--Hb_000880_040 Hb_170023_010--Hb_000087_120 Hb_001244_070 Hb_001244_070 Hb_170023_010--Hb_001244_070 Hb_000087_120--Hb_002379_060 Hb_000087_120--Hb_004709_030 Hb_000087_120--Hb_004324_320 Hb_000215_130 Hb_000215_130 Hb_000087_120--Hb_000215_130 Hb_000152_120 Hb_000152_120 Hb_000337_030--Hb_000152_120 Hb_005663_090 Hb_005663_090 Hb_000337_030--Hb_005663_090 Hb_000337_030--Hb_001244_070 Hb_000181_220 Hb_000181_220 Hb_000337_030--Hb_000181_220 Hb_000337_030--Hb_170023_010 Hb_004709_030--Hb_000365_440 Hb_001186_120 Hb_001186_120 Hb_004709_030--Hb_001186_120 Hb_026419_010 Hb_026419_010 Hb_004709_030--Hb_026419_010 Hb_004709_030--Hb_170023_010 Hb_000365_440--Hb_000880_040 Hb_000365_440--Hb_001244_070 Hb_005050_030 Hb_005050_030 Hb_000365_440--Hb_005050_030 Hb_004943_010 Hb_004943_010 Hb_002379_060--Hb_004943_010 Hb_001300_140 Hb_001300_140 Hb_002379_060--Hb_001300_140 Hb_000836_260 Hb_000836_260 Hb_002379_060--Hb_000836_260 Hb_002379_060--Hb_170023_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0559871 0.52202 0.368072 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.662363 0.605304

CAGE analysis