Hb_000337_030

Information

Type -
Description -
Location Contig337: 4956-8606
Sequence    

Annotation

kegg
ID rcu:RCOM_0415160
description amino acid transporter, putative
nr
ID XP_002533728.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9FF99
description Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=2 SV=1
trembl
ID B9T659
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0415160 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable amino acid permease 7 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35271: 4920-6320 , PASA_asmbl_35272: 7912-8652 , PASA_asmbl_35274: 7762-8583
cDNA
(Sanger)
(ID:Location)		 024_B19.ab1: 7948-8652 , 025_C24.ab1: 7941-8559 , 032_J13.ab1: 7912-8559

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000337_030 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_019278_010 0.087520422 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
3 Hb_000152_120 0.0954804361 - - alpha-l-fucosidase, putative [Ricinus communis]
4 Hb_005663_090 0.0965240494 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
5 Hb_001244_070 0.099866232 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
6 Hb_000181_220 0.1108504204 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
7 Hb_170023_010 0.1112494237 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
8 Hb_020805_070 0.1133419523 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
9 Hb_006469_090 0.1152570988 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
10 Hb_007850_110 0.1204263474 - - MADS-box transcription factor 3 [Hevea brasiliensis]
11 Hb_000951_090 0.1215893571 - - Oligopeptide transporter, putative [Ricinus communis]
12 Hb_000680_070 0.1231845241 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
13 Hb_007101_140 0.1321728143 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
14 Hb_004162_140 0.1355656179 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
15 Hb_005168_020 0.1357818836 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
16 Hb_001439_010 0.1376158311 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
17 Hb_001405_040 0.1380067376 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
18 Hb_033772_060 0.1380443965 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000880_040 0.1382482082 - - -
20 Hb_000365_440 0.1390635602 - - Acid phosphatase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000337_030 Hb_000337_030 Hb_019278_010 Hb_019278_010 Hb_000337_030--Hb_019278_010 Hb_000152_120 Hb_000152_120 Hb_000337_030--Hb_000152_120 Hb_005663_090 Hb_005663_090 Hb_000337_030--Hb_005663_090 Hb_001244_070 Hb_001244_070 Hb_000337_030--Hb_001244_070 Hb_000181_220 Hb_000181_220 Hb_000337_030--Hb_000181_220 Hb_170023_010 Hb_170023_010 Hb_000337_030--Hb_170023_010 Hb_019278_010--Hb_170023_010 Hb_000087_120 Hb_000087_120 Hb_019278_010--Hb_000087_120 Hb_004709_030 Hb_004709_030 Hb_019278_010--Hb_004709_030 Hb_000365_440 Hb_000365_440 Hb_019278_010--Hb_000365_440 Hb_002379_060 Hb_002379_060 Hb_019278_010--Hb_002379_060 Hb_000152_120--Hb_001244_070 Hb_001104_020 Hb_001104_020 Hb_000152_120--Hb_001104_020 Hb_000732_220 Hb_000732_220 Hb_000152_120--Hb_000732_220 Hb_000951_090 Hb_000951_090 Hb_000152_120--Hb_000951_090 Hb_020805_070 Hb_020805_070 Hb_000152_120--Hb_020805_070 Hb_001439_010 Hb_001439_010 Hb_005663_090--Hb_001439_010 Hb_000680_070 Hb_000680_070 Hb_005663_090--Hb_000680_070 Hb_006469_090 Hb_006469_090 Hb_005663_090--Hb_006469_090 Hb_005168_020 Hb_005168_020 Hb_005663_090--Hb_005168_020 Hb_005731_070 Hb_005731_070 Hb_005663_090--Hb_005731_070 Hb_000880_040 Hb_000880_040 Hb_001244_070--Hb_000880_040 Hb_001244_070--Hb_000365_440 Hb_001405_040 Hb_001405_040 Hb_001244_070--Hb_001405_040 Hb_004116_050 Hb_004116_050 Hb_001244_070--Hb_004116_050 Hb_001244_070--Hb_020805_070 Hb_029639_030 Hb_029639_030 Hb_000181_220--Hb_029639_030 Hb_033772_060 Hb_033772_060 Hb_000181_220--Hb_033772_060 Hb_007101_140 Hb_007101_140 Hb_000181_220--Hb_007101_140 Hb_007894_080 Hb_007894_080 Hb_000181_220--Hb_007894_080 Hb_001488_350 Hb_001488_350 Hb_000181_220--Hb_001488_350 Hb_000181_220--Hb_001405_040 Hb_004324_320 Hb_004324_320 Hb_170023_010--Hb_004324_320 Hb_170023_010--Hb_000365_440 Hb_170023_010--Hb_000880_040 Hb_170023_010--Hb_000087_120 Hb_170023_010--Hb_001244_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.725891 5.30025 5.40993 0.0123578 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0472873 0.0444775 5.93359 6.24099

CAGE analysis