Hb_000680_070

Information

Type -
Description -
Location Contig680: 42458-49337
Sequence    

Annotation

kegg
ID rcu:RCOM_0311990
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_012068977.1
description PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
swissprot
ID Q8RWW0
description Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1
trembl
ID A0A067L8G2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24769 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like serine threonine-protein kinase ale2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53743: 42949-44621 , PASA_asmbl_53744: 44924-49318
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_070 0.0 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
2 Hb_001439_010 0.0831478638 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
3 Hb_005663_090 0.099725573 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
4 Hb_006469_090 0.1021622416 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
5 Hb_000337_030 0.1231845241 - - amino acid transporter, putative [Ricinus communis]
6 Hb_007850_110 0.1327613358 - - MADS-box transcription factor 3 [Hevea brasiliensis]
7 Hb_004032_110 0.1400404236 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
8 Hb_002811_240 0.1414670572 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000181_220 0.143849557 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
10 Hb_001278_090 0.1456555828 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
11 Hb_008066_080 0.1487059411 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
12 Hb_001894_010 0.1497150355 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
13 Hb_000866_190 0.1503677884 - - transcription factor, putative [Ricinus communis]
14 Hb_000152_120 0.1522745566 - - alpha-l-fucosidase, putative [Ricinus communis]
15 Hb_021346_020 0.1529656883 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
16 Hb_007134_030 0.1531681266 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
17 Hb_007386_030 0.153602275 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
18 Hb_001675_270 0.1536836777 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
19 Hb_003607_140 0.1542973887 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
20 Hb_005332_050 0.1561038643 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]

Gene co-expression network

sample Hb_000680_070 Hb_000680_070 Hb_001439_010 Hb_001439_010 Hb_000680_070--Hb_001439_010 Hb_005663_090 Hb_005663_090 Hb_000680_070--Hb_005663_090 Hb_006469_090 Hb_006469_090 Hb_000680_070--Hb_006469_090 Hb_000337_030 Hb_000337_030 Hb_000680_070--Hb_000337_030 Hb_007850_110 Hb_007850_110 Hb_000680_070--Hb_007850_110 Hb_004032_110 Hb_004032_110 Hb_000680_070--Hb_004032_110 Hb_001439_010--Hb_006469_090 Hb_001439_010--Hb_005663_090 Hb_003607_140 Hb_003607_140 Hb_001439_010--Hb_003607_140 Hb_003879_020 Hb_003879_020 Hb_001439_010--Hb_003879_020 Hb_001439_010--Hb_004032_110 Hb_005663_090--Hb_000337_030 Hb_005663_090--Hb_006469_090 Hb_005168_020 Hb_005168_020 Hb_005663_090--Hb_005168_020 Hb_005731_070 Hb_005731_070 Hb_005663_090--Hb_005731_070 Hb_006469_090--Hb_007850_110 Hb_000866_190 Hb_000866_190 Hb_006469_090--Hb_000866_190 Hb_006469_090--Hb_003607_140 Hb_019278_010 Hb_019278_010 Hb_000337_030--Hb_019278_010 Hb_000152_120 Hb_000152_120 Hb_000337_030--Hb_000152_120 Hb_001244_070 Hb_001244_070 Hb_000337_030--Hb_001244_070 Hb_000181_220 Hb_000181_220 Hb_000337_030--Hb_000181_220 Hb_170023_010 Hb_170023_010 Hb_000337_030--Hb_170023_010 Hb_017098_050 Hb_017098_050 Hb_007850_110--Hb_017098_050 Hb_001109_130 Hb_001109_130 Hb_007850_110--Hb_001109_130 Hb_002635_010 Hb_002635_010 Hb_007850_110--Hb_002635_010 Hb_004607_160 Hb_004607_160 Hb_007850_110--Hb_004607_160 Hb_000130_480 Hb_000130_480 Hb_007850_110--Hb_000130_480 Hb_002949_020 Hb_002949_020 Hb_004032_110--Hb_002949_020 Hb_036388_010 Hb_036388_010 Hb_004032_110--Hb_036388_010 Hb_007590_100 Hb_007590_100 Hb_004032_110--Hb_007590_100 Hb_002397_050 Hb_002397_050 Hb_004032_110--Hb_002397_050 Hb_007134_030 Hb_007134_030 Hb_004032_110--Hb_007134_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.291823 2.00802 8.77183 10.1056 0.0236763 0.0217822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.627352 0.129922 0.532224 11.3526 11.2828

CAGE analysis