Hb_003607_140

Information

Type -
Description -
Location Contig3607: 132085-136775
Sequence    

Annotation

kegg
ID rcu:RCOM_1721350
description 3-ketoacyl-CoA thiolase B, putative (EC:2.3.1.16)
nr
ID XP_002521123.1
description 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
swissprot
ID Q56WD9
description 3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2
trembl
ID B9S554
description 3-ketoacyl-CoA thiolase B, putative OS=Ricinus communis GN=RCOM_1721350 PE=3 SV=1
Gene Ontology
ID GO:0003988
description 3-ketoacyl- thiolase peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37173: 132175-132289 , PASA_asmbl_37174: 134350-136587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003607_140 0.0 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
2 Hb_010174_180 0.0756157517 - - protein binding protein, putative [Ricinus communis]
3 Hb_006469_090 0.0947962222 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
4 Hb_001439_010 0.096231105 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
5 Hb_002635_020 0.1008438932 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
6 Hb_002316_020 0.1013357766 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
7 Hb_000210_040 0.1035653701 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
8 Hb_000230_360 0.1042070316 - - PREDICTED: BI1-like protein [Jatropha curcas]
9 Hb_001675_270 0.105495868 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
10 Hb_144449_010 0.1099868474 - - Potassium transporter, putative [Ricinus communis]
11 Hb_001440_010 0.1113149411 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
12 Hb_005568_050 0.1125508394 - - ascorbate peroxidase [Hevea brasiliensis]
13 Hb_003879_020 0.1140953942 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
14 Hb_000731_210 0.1153844451 - - conserved hypothetical protein [Ricinus communis]
15 Hb_031385_010 0.1193066096 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
16 Hb_002301_370 0.1230781426 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
17 Hb_000398_140 0.1233888425 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
18 Hb_000917_210 0.1252166087 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010557_020 0.1268980706 - - Mlo protein [Hevea brasiliensis]
20 Hb_006414_010 0.1279489692 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]

Gene co-expression network

sample Hb_003607_140 Hb_003607_140 Hb_010174_180 Hb_010174_180 Hb_003607_140--Hb_010174_180 Hb_006469_090 Hb_006469_090 Hb_003607_140--Hb_006469_090 Hb_001439_010 Hb_001439_010 Hb_003607_140--Hb_001439_010 Hb_002635_020 Hb_002635_020 Hb_003607_140--Hb_002635_020 Hb_002316_020 Hb_002316_020 Hb_003607_140--Hb_002316_020 Hb_000210_040 Hb_000210_040 Hb_003607_140--Hb_000210_040 Hb_010174_180--Hb_002316_020 Hb_031385_010 Hb_031385_010 Hb_010174_180--Hb_031385_010 Hb_010174_180--Hb_002635_020 Hb_001675_270 Hb_001675_270 Hb_010174_180--Hb_001675_270 Hb_000731_210 Hb_000731_210 Hb_010174_180--Hb_000731_210 Hb_006469_090--Hb_001439_010 Hb_007850_110 Hb_007850_110 Hb_006469_090--Hb_007850_110 Hb_000866_190 Hb_000866_190 Hb_006469_090--Hb_000866_190 Hb_005663_090 Hb_005663_090 Hb_006469_090--Hb_005663_090 Hb_000680_070 Hb_000680_070 Hb_006469_090--Hb_000680_070 Hb_001439_010--Hb_000680_070 Hb_001439_010--Hb_005663_090 Hb_003879_020 Hb_003879_020 Hb_001439_010--Hb_003879_020 Hb_004032_110 Hb_004032_110 Hb_001439_010--Hb_004032_110 Hb_002601_140 Hb_002601_140 Hb_002635_020--Hb_002601_140 Hb_000922_160 Hb_000922_160 Hb_002635_020--Hb_000922_160 Hb_002078_320 Hb_002078_320 Hb_002635_020--Hb_002078_320 Hb_000162_200 Hb_000162_200 Hb_002635_020--Hb_000162_200 Hb_004162_320 Hb_004162_320 Hb_002635_020--Hb_004162_320 Hb_003506_010 Hb_003506_010 Hb_002635_020--Hb_003506_010 Hb_002316_020--Hb_031385_010 Hb_002316_020--Hb_001675_270 Hb_000230_360 Hb_000230_360 Hb_002316_020--Hb_000230_360 Hb_001048_100 Hb_001048_100 Hb_002316_020--Hb_001048_100 Hb_007894_070 Hb_007894_070 Hb_000210_040--Hb_007894_070 Hb_006414_010 Hb_006414_010 Hb_000210_040--Hb_006414_010 Hb_004421_010 Hb_004421_010 Hb_000210_040--Hb_004421_010 Hb_000210_040--Hb_003879_020 Hb_000659_040 Hb_000659_040 Hb_000210_040--Hb_000659_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.220379 6.52476 12.206 13.5154 0.207201 0.419513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.352739 0.515421 0.337377 9.86839 13.9081

CAGE analysis