Hb_010174_180

Information

Type -
Description -
Location Contig10174: 152474-154844
Sequence    

Annotation

kegg
ID rcu:RCOM_1082540
description protein binding protein, putative
nr
ID XP_002515019.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q6IV57
description RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
trembl
ID B9RMQ0
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1082540 PE=4 SV=1
Gene Ontology
ID GO:0008270
description peroxisome biogenesis factor 10-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00859: 153208-153610 , PASA_asmbl_00860: 152754-153881 , PASA_asmbl_00861: 153973-154805
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_180 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_002316_020 0.07529422 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
3 Hb_003607_140 0.0756157517 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
4 Hb_031385_010 0.0973790181 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
5 Hb_002635_020 0.1058584935 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
6 Hb_001675_270 0.1072727233 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
7 Hb_000731_210 0.1089818891 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006469_090 0.1096652383 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
9 Hb_001440_010 0.1110860709 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
10 Hb_002301_370 0.1131693884 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
11 Hb_002078_320 0.1138258402 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
12 Hb_004162_320 0.1139087743 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
13 Hb_000230_360 0.1140105845 - - PREDICTED: BI1-like protein [Jatropha curcas]
14 Hb_005568_050 0.1160808065 - - ascorbate peroxidase [Hevea brasiliensis]
15 Hb_000694_050 0.1175260706 - - Nuclease PA3, putative [Ricinus communis]
16 Hb_000189_160 0.1188756205 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
17 Hb_001135_010 0.1193283538 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
18 Hb_000046_430 0.1195246119 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
19 Hb_002571_080 0.1201129263 - - secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides]
20 Hb_000932_060 0.12050839 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010174_180 Hb_010174_180 Hb_002316_020 Hb_002316_020 Hb_010174_180--Hb_002316_020 Hb_003607_140 Hb_003607_140 Hb_010174_180--Hb_003607_140 Hb_031385_010 Hb_031385_010 Hb_010174_180--Hb_031385_010 Hb_002635_020 Hb_002635_020 Hb_010174_180--Hb_002635_020 Hb_001675_270 Hb_001675_270 Hb_010174_180--Hb_001675_270 Hb_000731_210 Hb_000731_210 Hb_010174_180--Hb_000731_210 Hb_002316_020--Hb_031385_010 Hb_002316_020--Hb_001675_270 Hb_002316_020--Hb_003607_140 Hb_000230_360 Hb_000230_360 Hb_002316_020--Hb_000230_360 Hb_001048_100 Hb_001048_100 Hb_002316_020--Hb_001048_100 Hb_006469_090 Hb_006469_090 Hb_003607_140--Hb_006469_090 Hb_001439_010 Hb_001439_010 Hb_003607_140--Hb_001439_010 Hb_003607_140--Hb_002635_020 Hb_000210_040 Hb_000210_040 Hb_003607_140--Hb_000210_040 Hb_031385_010--Hb_000230_360 Hb_031385_010--Hb_001048_100 Hb_000061_310 Hb_000061_310 Hb_031385_010--Hb_000061_310 Hb_003687_040 Hb_003687_040 Hb_031385_010--Hb_003687_040 Hb_002601_140 Hb_002601_140 Hb_002635_020--Hb_002601_140 Hb_000922_160 Hb_000922_160 Hb_002635_020--Hb_000922_160 Hb_002078_320 Hb_002078_320 Hb_002635_020--Hb_002078_320 Hb_000162_200 Hb_000162_200 Hb_002635_020--Hb_000162_200 Hb_004162_320 Hb_004162_320 Hb_002635_020--Hb_004162_320 Hb_003506_010 Hb_003506_010 Hb_002635_020--Hb_003506_010 Hb_005568_050 Hb_005568_050 Hb_001675_270--Hb_005568_050 Hb_001675_270--Hb_003607_140 Hb_005582_030 Hb_005582_030 Hb_001675_270--Hb_005582_030 Hb_001675_270--Hb_001439_010 Hb_002301_370 Hb_002301_370 Hb_000731_210--Hb_002301_370 Hb_000024_130 Hb_000024_130 Hb_000731_210--Hb_000024_130 Hb_000731_210--Hb_001048_100 Hb_000731_210--Hb_031385_010 Hb_000318_170 Hb_000318_170 Hb_000731_210--Hb_000318_170 Hb_003106_230 Hb_003106_230 Hb_000731_210--Hb_003106_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0274923 4.09243 9.9192 7.5578 0.0590128 0.181348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.139544 0.285451 0.248405 5.7686 7.6551

CAGE analysis