Hb_005568_050

Information

Type -
Description -
Location Contig5568: 61646-64377
Sequence    

Annotation

kegg
ID pop:POPTR_0009s02070g
description POPTRDRAFT_821619; cytosolic ascorbate peroxidase family protein
nr
ID AAO14118.1
description ascorbate peroxidase [Hevea brasiliensis]
swissprot
ID P48534
description L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1 SV=2
trembl
ID Q8GZP1
description Ascorbate peroxidase OS=Hevea brasiliensis GN=APX PE=2 SV=1
Gene Ontology
ID GO:0004601
description l-ascorbate cytosolic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48567: 61658-65040 , PASA_asmbl_48569: 61718-64809
cDNA
(Sanger)
(ID:Location)		 002_G14.ab1: 61660-64334 , 003_I24.ab1: 61681-64482 , 003_J17.ab1: 61660-64350 , 003_K08.ab1: 61718-64192 , 005_G13.ab1: 61660-64350 , 005_K01.ab1: 61660-64495 , 006_K17.ab1: 61655-64161 , 006_O19.ab1: 61655-64188 , 015_A21.ab1: 61664-64100 , 015_I04.ab1: 61660-63938 , 016_M14.ab1: 61660-63965 , 017_K15.ab1: 61664-64097 , 018_O22.ab1: 61689-62238 , 021_B13.ab1: 61664-64332 , 023_M13.ab1: 61664-63538 , 023_N13.ab1: 61655-63741 , 025_E04.ab1: 63543-64783 , 032_C21.ab1: 61655-63895 , 034_C23.ab1: 61655-64331 , 039_D07.ab1: 61659-64327 , 041_L11.ab1: 61655-63964 , 043_H17.ab1: 61660-64192 , 043_M22.ab1: 61664-64352 , 044_F02.ab1: 61659-64342 , 049_D02.ab1: 61664-64160 , 050_K22.ab1: 61674-62337 , 052_C20.ab1: 61700-63963

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005568_050 0.0 - - ascorbate peroxidase [Hevea brasiliensis]
2 Hb_001675_270 0.0801035741 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
3 Hb_000760_080 0.1100059311 - - mutt domain protein, putative [Ricinus communis]
4 Hb_000042_380 0.11186101 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
5 Hb_003607_140 0.1125508394 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
6 Hb_010174_180 0.1160808065 - - protein binding protein, putative [Ricinus communis]
7 Hb_002316_020 0.1175107272 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
8 Hb_001048_100 0.1195358522 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
9 Hb_000024_130 0.1254430015 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001689_070 0.126853311 - - cytochrome P450, putative [Ricinus communis]
11 Hb_006469_090 0.1322709462 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
12 Hb_012033_010 0.1334006592 - - PREDICTED: histone H1.2-like [Jatropha curcas]
13 Hb_000731_210 0.1336155488 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000077_400 0.1343056441 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_007575_030 0.1358280055 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
16 Hb_002888_040 0.1369981796 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
17 Hb_005545_020 0.137938147 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
18 Hb_001277_400 0.1383147431 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
19 Hb_001439_010 0.1400250646 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
20 Hb_001360_030 0.140338474 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]

Gene co-expression network

sample Hb_005568_050 Hb_005568_050 Hb_001675_270 Hb_001675_270 Hb_005568_050--Hb_001675_270 Hb_000760_080 Hb_000760_080 Hb_005568_050--Hb_000760_080 Hb_000042_380 Hb_000042_380 Hb_005568_050--Hb_000042_380 Hb_003607_140 Hb_003607_140 Hb_005568_050--Hb_003607_140 Hb_010174_180 Hb_010174_180 Hb_005568_050--Hb_010174_180 Hb_002316_020 Hb_002316_020 Hb_005568_050--Hb_002316_020 Hb_001675_270--Hb_002316_020 Hb_001675_270--Hb_003607_140 Hb_001675_270--Hb_010174_180 Hb_005582_030 Hb_005582_030 Hb_001675_270--Hb_005582_030 Hb_001439_010 Hb_001439_010 Hb_001675_270--Hb_001439_010 Hb_001048_100 Hb_001048_100 Hb_000760_080--Hb_001048_100 Hb_000024_130 Hb_000024_130 Hb_000760_080--Hb_000024_130 Hb_002503_050 Hb_002503_050 Hb_000760_080--Hb_002503_050 Hb_033312_050 Hb_033312_050 Hb_000760_080--Hb_033312_050 Hb_000731_210 Hb_000731_210 Hb_000760_080--Hb_000731_210 Hb_008695_150 Hb_008695_150 Hb_000042_380--Hb_008695_150 Hb_005545_020 Hb_005545_020 Hb_000042_380--Hb_005545_020 Hb_007575_030 Hb_007575_030 Hb_000042_380--Hb_007575_030 Hb_001277_400 Hb_001277_400 Hb_000042_380--Hb_001277_400 Hb_004883_020 Hb_004883_020 Hb_000042_380--Hb_004883_020 Hb_003607_140--Hb_010174_180 Hb_006469_090 Hb_006469_090 Hb_003607_140--Hb_006469_090 Hb_003607_140--Hb_001439_010 Hb_002635_020 Hb_002635_020 Hb_003607_140--Hb_002635_020 Hb_003607_140--Hb_002316_020 Hb_000210_040 Hb_000210_040 Hb_003607_140--Hb_000210_040 Hb_010174_180--Hb_002316_020 Hb_031385_010 Hb_031385_010 Hb_010174_180--Hb_031385_010 Hb_010174_180--Hb_002635_020 Hb_010174_180--Hb_000731_210 Hb_002316_020--Hb_031385_010 Hb_000230_360 Hb_000230_360 Hb_002316_020--Hb_000230_360 Hb_002316_020--Hb_001048_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.5131 576.605 1210.05 716.295 30.3836 28.5316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.6188 58.3198 68.8294 983.652 1126.37

CAGE analysis