Hb_005545_020

Information

Type -
Description -
Location Contig5545: 11795-37356
Sequence    

Annotation

kegg
ID rcu:RCOM_0687330
description endo beta n-acetylglucosaminidase, putative
nr
ID XP_002520784.1
description endo beta n-acetylglucosaminidase, putative [Ricinus communis]
swissprot
ID F4JZC2
description Cytosolic endo-beta-N-acetylglucosaminidase 1 OS=Arabidopsis thaliana GN=ENGASE1 PE=1 SV=1
trembl
ID B9S465
description Endo beta n-acetylglucosaminidase, putative OS=Ricinus communis GN=RCOM_0687330 PE=4 SV=1
Gene Ontology
ID GO:0005737
description cytosolic endo-beta-n-acetylglucosaminidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48446: 11745-13049 , PASA_asmbl_48447: 17161-17390 , PASA_asmbl_48449: 32987-37356 , PASA_asmbl_48450: 34901-37195 , PASA_asmbl_48451: 32982-34814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005545_020 0.0 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
2 Hb_003299_020 0.072513973 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
3 Hb_000042_380 0.1065553684 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
4 Hb_000753_110 0.1142207284 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
5 Hb_001754_050 0.1251152975 - - protein arginine n-methyltransferase, putative [Ricinus communis]
6 Hb_004883_020 0.1318247973 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
7 Hb_007575_030 0.1365917428 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
8 Hb_005568_050 0.137938147 - - ascorbate peroxidase [Hevea brasiliensis]
9 Hb_000731_210 0.1385334631 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008695_150 0.138619257 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
11 Hb_010672_050 0.1400024209 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
12 Hb_001048_100 0.1412296547 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
13 Hb_001240_050 0.1424835375 - - PREDICTED: CSC1-like protein At1g32090 [Jatropha curcas]
14 Hb_001675_270 0.1463611238 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
15 Hb_000002_350 0.1483505152 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
16 Hb_112064_010 0.1492974643 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
17 Hb_003050_360 0.1496643922 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
18 Hb_000009_420 0.1499526515 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
19 Hb_003659_010 0.1500106814 - - aldo/keto reductase AKR [Manihot esculenta]
20 Hb_003879_020 0.1505902305 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005545_020 Hb_005545_020 Hb_003299_020 Hb_003299_020 Hb_005545_020--Hb_003299_020 Hb_000042_380 Hb_000042_380 Hb_005545_020--Hb_000042_380 Hb_000753_110 Hb_000753_110 Hb_005545_020--Hb_000753_110 Hb_001754_050 Hb_001754_050 Hb_005545_020--Hb_001754_050 Hb_004883_020 Hb_004883_020 Hb_005545_020--Hb_004883_020 Hb_007575_030 Hb_007575_030 Hb_005545_020--Hb_007575_030 Hb_003299_020--Hb_000753_110 Hb_010672_050 Hb_010672_050 Hb_003299_020--Hb_010672_050 Hb_001377_530 Hb_001377_530 Hb_003299_020--Hb_001377_530 Hb_000009_420 Hb_000009_420 Hb_003299_020--Hb_000009_420 Hb_003398_040 Hb_003398_040 Hb_003299_020--Hb_003398_040 Hb_008695_150 Hb_008695_150 Hb_000042_380--Hb_008695_150 Hb_000042_380--Hb_007575_030 Hb_001277_400 Hb_001277_400 Hb_000042_380--Hb_001277_400 Hb_005568_050 Hb_005568_050 Hb_000042_380--Hb_005568_050 Hb_000042_380--Hb_004883_020 Hb_002641_120 Hb_002641_120 Hb_000753_110--Hb_002641_120 Hb_000310_060 Hb_000310_060 Hb_000753_110--Hb_000310_060 Hb_000753_110--Hb_000009_420 Hb_000186_030 Hb_000186_030 Hb_000753_110--Hb_000186_030 Hb_000753_110--Hb_003398_040 Hb_143766_080 Hb_143766_080 Hb_001754_050--Hb_143766_080 Hb_004129_010 Hb_004129_010 Hb_001754_050--Hb_004129_010 Hb_000392_250 Hb_000392_250 Hb_001754_050--Hb_000392_250 Hb_001754_050--Hb_004883_020 Hb_000057_130 Hb_000057_130 Hb_001754_050--Hb_000057_130 Hb_004218_130 Hb_004218_130 Hb_001754_050--Hb_004218_130 Hb_004883_020--Hb_007575_030 Hb_000309_030 Hb_000309_030 Hb_004883_020--Hb_000309_030 Hb_003226_090 Hb_003226_090 Hb_004883_020--Hb_003226_090 Hb_004297_090 Hb_004297_090 Hb_004883_020--Hb_004297_090 Hb_000098_180 Hb_000098_180 Hb_004883_020--Hb_000098_180 Hb_000261_310 Hb_000261_310 Hb_007575_030--Hb_000261_310 Hb_000165_070 Hb_000165_070 Hb_007575_030--Hb_000165_070 Hb_000116_240 Hb_000116_240 Hb_007575_030--Hb_000116_240 Hb_000318_170 Hb_000318_170 Hb_007575_030--Hb_000318_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.143738 2.04095 6.66145 4.40232 0.0896994 0.135723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.504582 0.571845 1.07257 4.69452 3.55757

CAGE analysis