Hb_002641_120

Information

Type -
Description -
Location Contig2641: 165386-165862
Sequence    

Annotation

kegg
ID tcc:TCM_021387
description Ca2+-binding protein 1
nr
ID XP_012084098.1
description PREDICTED: calmodulin [Jatropha curcas]
swissprot
ID P23286
description Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2
trembl
ID A0A067K6N7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19015 PE=4 SV=1
Gene Ontology
ID GO:0005829
description hypersensitive reaction associated ca2+-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 025_O23.ab1: 165152-165935

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_120 0.0 - - PREDICTED: calmodulin [Jatropha curcas]
2 Hb_000753_110 0.0939563711 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
3 Hb_000310_060 0.0972288179 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
4 Hb_001377_530 0.1090027 - - NC domain-containing family protein [Populus trichocarpa]
5 Hb_003398_040 0.1169250057 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
6 Hb_002701_070 0.1178875399 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
7 Hb_001433_150 0.118670495 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000186_030 0.1188732508 - - PREDICTED: uncharacterized protein LOC105649276 isoform X1 [Jatropha curcas]
9 Hb_000011_560 0.1225911611 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
10 Hb_010868_040 0.1266797799 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
11 Hb_000327_200 0.132941084 - - glutathione-s-transferase omega, putative [Ricinus communis]
12 Hb_004855_020 0.1337454855 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
13 Hb_003299_020 0.1354694435 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
14 Hb_000207_350 0.1363902006 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
15 Hb_000940_030 0.137671193 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
16 Hb_010381_040 0.1391212253 - - beta-galactosidase, putative [Ricinus communis]
17 Hb_000270_280 0.1399073388 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
18 Hb_000958_120 0.1399482817 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
19 Hb_006153_150 0.1409430051 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
20 Hb_000009_420 0.1411131751 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002641_120 Hb_002641_120 Hb_000753_110 Hb_000753_110 Hb_002641_120--Hb_000753_110 Hb_000310_060 Hb_000310_060 Hb_002641_120--Hb_000310_060 Hb_001377_530 Hb_001377_530 Hb_002641_120--Hb_001377_530 Hb_003398_040 Hb_003398_040 Hb_002641_120--Hb_003398_040 Hb_002701_070 Hb_002701_070 Hb_002641_120--Hb_002701_070 Hb_001433_150 Hb_001433_150 Hb_002641_120--Hb_001433_150 Hb_003299_020 Hb_003299_020 Hb_000753_110--Hb_003299_020 Hb_000753_110--Hb_000310_060 Hb_000009_420 Hb_000009_420 Hb_000753_110--Hb_000009_420 Hb_000186_030 Hb_000186_030 Hb_000753_110--Hb_000186_030 Hb_000753_110--Hb_003398_040 Hb_000270_280 Hb_000270_280 Hb_000310_060--Hb_000270_280 Hb_000310_060--Hb_003398_040 Hb_001587_040 Hb_001587_040 Hb_000310_060--Hb_001587_040 Hb_000940_030 Hb_000940_030 Hb_000310_060--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000310_060--Hb_000327_200 Hb_005527_060 Hb_005527_060 Hb_000310_060--Hb_005527_060 Hb_003050_360 Hb_003050_360 Hb_001377_530--Hb_003050_360 Hb_001377_530--Hb_003398_040 Hb_001123_310 Hb_001123_310 Hb_001377_530--Hb_001123_310 Hb_001377_530--Hb_003299_020 Hb_001408_170 Hb_001408_170 Hb_001377_530--Hb_001408_170 Hb_003398_040--Hb_000009_420 Hb_003398_040--Hb_001587_040 Hb_003398_040--Hb_005527_060 Hb_010868_040 Hb_010868_040 Hb_003398_040--Hb_010868_040 Hb_000465_410 Hb_000465_410 Hb_002701_070--Hb_000465_410 Hb_001544_050 Hb_001544_050 Hb_002701_070--Hb_001544_050 Hb_001180_010 Hb_001180_010 Hb_002701_070--Hb_001180_010 Hb_000958_120 Hb_000958_120 Hb_002701_070--Hb_000958_120 Hb_000996_080 Hb_000996_080 Hb_002701_070--Hb_000996_080 Hb_002701_070--Hb_010868_040 Hb_001433_150--Hb_001180_010 Hb_002028_110 Hb_002028_110 Hb_001433_150--Hb_002028_110 Hb_001153_100 Hb_001153_100 Hb_001433_150--Hb_001153_100 Hb_001433_150--Hb_001544_050 Hb_002759_220 Hb_002759_220 Hb_001433_150--Hb_002759_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.577 145.712 615.394 323.492 2.84106 2.76716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.9559 41.9658 64.4509 127.461 365.64

CAGE analysis