Hb_001408_170

Information

Type -
Description -
Location Contig1408: 157622-161756
Sequence    

Annotation

kegg
ID pop:POPTR_0016s00580g
description hypothetical protein
nr
ID XP_012074814.1
description PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
swissprot
ID Q8GWU0
description Phosphoglycolate phosphatase 2 OS=Arabidopsis thaliana GN=PGLP2 PE=1 SV=1
trembl
ID A0A067KTC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08968 PE=4 SV=1
Gene Ontology
ID GO:0009507
description phosphoglycolate phosphatase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11058: 157581-161837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001408_170 0.0 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
2 Hb_004052_100 0.1043977904 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
3 Hb_001268_160 0.1079074444 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]
4 Hb_001401_040 0.1189009926 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
5 Hb_001377_530 0.1216489562 - - NC domain-containing family protein [Populus trichocarpa]
6 Hb_010381_040 0.1316984387 - - beta-galactosidase, putative [Ricinus communis]
7 Hb_011174_040 0.139404402 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001250_130 0.1493324333 - - hypothetical protein POPTR_0008s19280g [Populus trichocarpa]
9 Hb_002641_120 0.1503898815 - - PREDICTED: calmodulin [Jatropha curcas]
10 Hb_017439_010 0.1528599039 - - putative actin-97 protein [Linum usitatissimum]
11 Hb_003398_040 0.153041075 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
12 Hb_000008_200 0.1562942245 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
13 Hb_000260_040 0.156302542 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
14 Hb_006153_150 0.1563769735 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
15 Hb_000139_280 0.1592445091 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
16 Hb_008053_030 0.1594584799 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
17 Hb_004650_030 0.1596367111 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
18 Hb_014508_010 0.1622488965 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
19 Hb_000190_220 0.1637680409 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
20 Hb_000956_050 0.1644287034 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001408_170 Hb_001408_170 Hb_004052_100 Hb_004052_100 Hb_001408_170--Hb_004052_100 Hb_001268_160 Hb_001268_160 Hb_001408_170--Hb_001268_160 Hb_001401_040 Hb_001401_040 Hb_001408_170--Hb_001401_040 Hb_001377_530 Hb_001377_530 Hb_001408_170--Hb_001377_530 Hb_010381_040 Hb_010381_040 Hb_001408_170--Hb_010381_040 Hb_011174_040 Hb_011174_040 Hb_001408_170--Hb_011174_040 Hb_004052_100--Hb_011174_040 Hb_001329_070 Hb_001329_070 Hb_004052_100--Hb_001329_070 Hb_003299_020 Hb_003299_020 Hb_004052_100--Hb_003299_020 Hb_003398_040 Hb_003398_040 Hb_004052_100--Hb_003398_040 Hb_004052_100--Hb_001377_530 Hb_000008_200 Hb_000008_200 Hb_001268_160--Hb_000008_200 Hb_001268_160--Hb_010381_040 Hb_008053_030 Hb_008053_030 Hb_001268_160--Hb_008053_030 Hb_001268_160--Hb_001401_040 Hb_017439_010 Hb_017439_010 Hb_001268_160--Hb_017439_010 Hb_003055_090 Hb_003055_090 Hb_001401_040--Hb_003055_090 Hb_003408_010 Hb_003408_010 Hb_001401_040--Hb_003408_010 Hb_004650_030 Hb_004650_030 Hb_001401_040--Hb_004650_030 Hb_001401_040--Hb_017439_010 Hb_003050_360 Hb_003050_360 Hb_001377_530--Hb_003050_360 Hb_002641_120 Hb_002641_120 Hb_001377_530--Hb_002641_120 Hb_001377_530--Hb_003398_040 Hb_001123_310 Hb_001123_310 Hb_001377_530--Hb_001123_310 Hb_001377_530--Hb_003299_020 Hb_000207_350 Hb_000207_350 Hb_010381_040--Hb_000207_350 Hb_004855_020 Hb_004855_020 Hb_010381_040--Hb_004855_020 Hb_010868_040 Hb_010868_040 Hb_010381_040--Hb_010868_040 Hb_000243_060 Hb_000243_060 Hb_010381_040--Hb_000243_060 Hb_010381_040--Hb_001123_310 Hb_002701_070 Hb_002701_070 Hb_010381_040--Hb_002701_070 Hb_011174_040--Hb_003050_360 Hb_000076_030 Hb_000076_030 Hb_011174_040--Hb_000076_030 Hb_007101_260 Hb_007101_260 Hb_011174_040--Hb_007101_260 Hb_048476_140 Hb_048476_140 Hb_011174_040--Hb_048476_140 Hb_010672_050 Hb_010672_050 Hb_011174_040--Hb_010672_050 Hb_011174_040--Hb_010381_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.156762 1.44677 10.8936 8.7347 0.109809 0.0324477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.34938 1.72481 0.924001 1.82147 4.31674

CAGE analysis