Hb_048476_140

Information

Type -
Description -
Location Contig48476: 99919-111649
Sequence    

Annotation

kegg
ID rcu:RCOM_0053600
description dynamin, putative
nr
ID XP_012072311.1
description PREDICTED: dynamin-related protein 1C [Jatropha curcas]
swissprot
ID Q8LF21
description Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2
trembl
ID A0A067L0V3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04763 PE=3 SV=1
Gene Ontology
ID GO:0005739
description dynamin-related protein 1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44949: 99941-111396
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_140 0.0 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
2 Hb_000076_030 0.0670048352 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
3 Hb_001180_010 0.0817880409 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
4 Hb_004041_050 0.1002863081 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_022693_110 0.1015282643 - - phosphate transporter [Manihot esculenta]
6 Hb_042083_030 0.1086622478 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_161396_010 0.1124876548 - - hypothetical protein F383_26394 [Gossypium arboreum]
8 Hb_000032_610 0.1162184937 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
9 Hb_011174_040 0.1180567245 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000108_240 0.123403872 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
11 Hb_000465_410 0.1268398692 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004994_330 0.1297350872 - - DNA binding protein, putative [Ricinus communis]
13 Hb_001544_050 0.1336233456 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
14 Hb_000649_040 0.1349087005 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
15 Hb_002949_020 0.1379348658 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
16 Hb_074197_030 0.1407290682 - - unnamed protein product [Vitis vinifera]
17 Hb_002701_070 0.1426596341 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
18 Hb_000749_020 0.1434247462 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
19 Hb_000327_360 0.1440946536 - - unnamed protein product [Coffea canephora]
20 Hb_000612_090 0.1446919859 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_048476_140 Hb_048476_140 Hb_000076_030 Hb_000076_030 Hb_048476_140--Hb_000076_030 Hb_001180_010 Hb_001180_010 Hb_048476_140--Hb_001180_010 Hb_004041_050 Hb_004041_050 Hb_048476_140--Hb_004041_050 Hb_022693_110 Hb_022693_110 Hb_048476_140--Hb_022693_110 Hb_042083_030 Hb_042083_030 Hb_048476_140--Hb_042083_030 Hb_161396_010 Hb_161396_010 Hb_048476_140--Hb_161396_010 Hb_000076_030--Hb_001180_010 Hb_000076_030--Hb_161396_010 Hb_000076_030--Hb_022693_110 Hb_011174_040 Hb_011174_040 Hb_000076_030--Hb_011174_040 Hb_000076_030--Hb_042083_030 Hb_001544_050 Hb_001544_050 Hb_001180_010--Hb_001544_050 Hb_004994_330 Hb_004994_330 Hb_001180_010--Hb_004994_330 Hb_000465_410 Hb_000465_410 Hb_001180_010--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_001180_010--Hb_002701_070 Hb_004041_050--Hb_001180_010 Hb_004041_050--Hb_000076_030 Hb_004041_050--Hb_042083_030 Hb_121089_050 Hb_121089_050 Hb_004041_050--Hb_121089_050 Hb_002759_220 Hb_002759_220 Hb_004041_050--Hb_002759_220 Hb_000200_330 Hb_000200_330 Hb_022693_110--Hb_000200_330 Hb_022693_110--Hb_011174_040 Hb_000689_050 Hb_000689_050 Hb_022693_110--Hb_000689_050 Hb_022693_110--Hb_004994_330 Hb_000193_340 Hb_000193_340 Hb_042083_030--Hb_000193_340 Hb_000417_380 Hb_000417_380 Hb_042083_030--Hb_000417_380 Hb_042083_030--Hb_161396_010 Hb_007101_260 Hb_007101_260 Hb_161396_010--Hb_007101_260 Hb_161396_010--Hb_000193_340 Hb_000808_150 Hb_000808_150 Hb_161396_010--Hb_000808_150 Hb_161396_010--Hb_002759_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.362908 0.60697 7.93359 8.97219 0.196601 0.207649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.422459 0.74039 1.12154 2.72569 7.53406

CAGE analysis