Hb_000417_380

Information

Type -
Description -
Location Contig417: 327562-330688
Sequence    

Annotation

kegg
ID tcc:TCM_029640
description SecY protein transport family protein
nr
ID XP_007025305.1
description SecY protein transport family protein [Theobroma cacao]
swissprot
ID Q54XK2
description Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1
trembl
ID A0A061GFI6
description SecY protein transport family protein OS=Theobroma cacao GN=TCM_029640 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transport protein sec61 subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41283: 327580-330713 , PASA_asmbl_41284: 327580-330710 , PASA_asmbl_41285: 331378-334979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_380 0.0 - - SecY protein transport family protein [Theobroma cacao]
2 Hb_000580_110 0.0902681201 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
3 Hb_000236_180 0.1001571834 - - serine hydroxymethyltransferase, putative [Ricinus communis]
4 Hb_036388_010 0.1059035519 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
5 Hb_189003_070 0.1102735225 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
6 Hb_000077_310 0.1111561179 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
7 Hb_003783_050 0.1156942812 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001493_060 0.1204170124 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
9 Hb_003226_250 0.1212178061 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
10 Hb_000808_150 0.1214477668 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
11 Hb_002495_030 0.1272177675 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
12 Hb_042083_030 0.1278688604 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_006615_230 0.1324660197 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
14 Hb_000327_360 0.1378249472 - - unnamed protein product [Coffea canephora]
15 Hb_006736_050 0.1379466834 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
16 Hb_003006_090 0.1396439755 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
17 Hb_000077_100 0.1396530365 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
18 Hb_006750_010 0.1403979351 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
19 Hb_161396_010 0.143222232 - - hypothetical protein F383_26394 [Gossypium arboreum]
20 Hb_001369_010 0.1443158843 - - Nodulation receptor kinase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000417_380 Hb_000417_380 Hb_000580_110 Hb_000580_110 Hb_000417_380--Hb_000580_110 Hb_000236_180 Hb_000236_180 Hb_000417_380--Hb_000236_180 Hb_036388_010 Hb_036388_010 Hb_000417_380--Hb_036388_010 Hb_189003_070 Hb_189003_070 Hb_000417_380--Hb_189003_070 Hb_000077_310 Hb_000077_310 Hb_000417_380--Hb_000077_310 Hb_003783_050 Hb_003783_050 Hb_000417_380--Hb_003783_050 Hb_000580_110--Hb_000236_180 Hb_002495_030 Hb_002495_030 Hb_000580_110--Hb_002495_030 Hb_000580_110--Hb_000077_310 Hb_001195_380 Hb_001195_380 Hb_000580_110--Hb_001195_380 Hb_001493_060 Hb_001493_060 Hb_000580_110--Hb_001493_060 Hb_003470_110 Hb_003470_110 Hb_000236_180--Hb_003470_110 Hb_030565_100 Hb_030565_100 Hb_000236_180--Hb_030565_100 Hb_006615_230 Hb_006615_230 Hb_000236_180--Hb_006615_230 Hb_000077_100 Hb_000077_100 Hb_000236_180--Hb_000077_100 Hb_000768_150 Hb_000768_150 Hb_036388_010--Hb_000768_150 Hb_035834_010 Hb_035834_010 Hb_036388_010--Hb_035834_010 Hb_036388_010--Hb_003783_050 Hb_000997_320 Hb_000997_320 Hb_036388_010--Hb_000997_320 Hb_006736_050 Hb_006736_050 Hb_036388_010--Hb_006736_050 Hb_189003_070--Hb_006615_230 Hb_189003_070--Hb_006736_050 Hb_134014_010 Hb_134014_010 Hb_189003_070--Hb_134014_010 Hb_189003_070--Hb_036388_010 Hb_001119_070 Hb_001119_070 Hb_189003_070--Hb_001119_070 Hb_000808_150 Hb_000808_150 Hb_000077_310--Hb_000808_150 Hb_000139_300 Hb_000139_300 Hb_000077_310--Hb_000139_300 Hb_000107_350 Hb_000107_350 Hb_000077_310--Hb_000107_350 Hb_003226_250 Hb_003226_250 Hb_000077_310--Hb_003226_250 Hb_000941_120 Hb_000941_120 Hb_003783_050--Hb_000941_120 Hb_030312_030 Hb_030312_030 Hb_003783_050--Hb_030312_030 Hb_001916_150 Hb_001916_150 Hb_003783_050--Hb_001916_150 Hb_003783_050--Hb_035834_010 Hb_000445_370 Hb_000445_370 Hb_003783_050--Hb_000445_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.19119 7.20468 20.2502 59.4335 1.63426 2.48558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08673 2.32236 7.32897 15.2412 46.7591

CAGE analysis