Hb_000107_350

Information

Type -
Description -
Location Contig107: 251284-251580
Sequence    

Annotation

kegg
ID pop:POPTR_0004s21730g
description hypothetical protein
nr
ID XP_012074076.1
description PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10745 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_350 0.0 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
2 Hb_000649_040 0.1024740861 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
3 Hb_000077_310 0.1162733448 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
4 Hb_011310_040 0.1249119931 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
5 Hb_000808_150 0.1254619212 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
6 Hb_003226_250 0.1325029627 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
7 Hb_004055_020 0.1419237209 - - PREDICTED: uncharacterized protein LOC105631433 [Jatropha curcas]
8 Hb_000438_120 0.1446379015 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_020805_140 0.1515546686 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
10 Hb_000417_380 0.152226915 - - SecY protein transport family protein [Theobroma cacao]
11 Hb_000139_300 0.1533573027 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
12 Hb_002596_080 0.1545092512 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
13 Hb_026527_010 0.1547735767 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
14 Hb_002157_270 0.1563229638 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
15 Hb_001369_630 0.1571368556 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
16 Hb_000049_160 0.1583357496 - - tyrosine decarboxylase family protein [Populus trichocarpa]
17 Hb_002759_220 0.1646538713 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
18 Hb_003935_070 0.1648833951 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
19 Hb_000580_110 0.1684442302 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
20 Hb_000246_130 0.1687634559 - - tubulin alpha chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000107_350 Hb_000107_350 Hb_000649_040 Hb_000649_040 Hb_000107_350--Hb_000649_040 Hb_000077_310 Hb_000077_310 Hb_000107_350--Hb_000077_310 Hb_011310_040 Hb_011310_040 Hb_000107_350--Hb_011310_040 Hb_000808_150 Hb_000808_150 Hb_000107_350--Hb_000808_150 Hb_003226_250 Hb_003226_250 Hb_000107_350--Hb_003226_250 Hb_004055_020 Hb_004055_020 Hb_000107_350--Hb_004055_020 Hb_003935_070 Hb_003935_070 Hb_000649_040--Hb_003935_070 Hb_000649_040--Hb_000808_150 Hb_000649_040--Hb_000077_310 Hb_000749_020 Hb_000749_020 Hb_000649_040--Hb_000749_020 Hb_000805_010 Hb_000805_010 Hb_000649_040--Hb_000805_010 Hb_000077_310--Hb_000808_150 Hb_000417_380 Hb_000417_380 Hb_000077_310--Hb_000417_380 Hb_000139_300 Hb_000139_300 Hb_000077_310--Hb_000139_300 Hb_000580_110 Hb_000580_110 Hb_000077_310--Hb_000580_110 Hb_000077_310--Hb_003226_250 Hb_002596_080 Hb_002596_080 Hb_011310_040--Hb_002596_080 Hb_011310_040--Hb_000139_300 Hb_002157_270 Hb_002157_270 Hb_011310_040--Hb_002157_270 Hb_011310_040--Hb_003226_250 Hb_002164_020 Hb_002164_020 Hb_011310_040--Hb_002164_020 Hb_004306_110 Hb_004306_110 Hb_011310_040--Hb_004306_110 Hb_000808_150--Hb_000139_300 Hb_000808_150--Hb_000749_020 Hb_001369_010 Hb_001369_010 Hb_000808_150--Hb_001369_010 Hb_000327_360 Hb_000327_360 Hb_000808_150--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_000808_150--Hb_161396_010 Hb_003226_250--Hb_001369_010 Hb_003226_250--Hb_000808_150 Hb_002759_220 Hb_002759_220 Hb_003226_250--Hb_002759_220 Hb_003226_250--Hb_002596_080 Hb_003462_040 Hb_003462_040 Hb_003226_250--Hb_003462_040 Hb_000950_030 Hb_000950_030 Hb_004055_020--Hb_000950_030 Hb_004055_020--Hb_002157_270 Hb_000806_130 Hb_000806_130 Hb_004055_020--Hb_000806_130 Hb_026527_010 Hb_026527_010 Hb_004055_020--Hb_026527_010 Hb_000077_100 Hb_000077_100 Hb_004055_020--Hb_000077_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.61356 2.96066 19.6435 61.6605 1.40793 1.386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5188 7.26042 8.55805 10.4025 49.2215

CAGE analysis