Hb_003462_040

Information

Type -
Description -
Location Contig3462: 35431-39379
Sequence    

Annotation

kegg
ID rcu:RCOM_0481390
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_002530935.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9LTC0
description Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1
trembl
ID B9SY66
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0481390 PE=4 SV=1
Gene Ontology
ID GO:0004715
description probable receptor-like protein kinase at5g47070

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36101: 36683-37047 , PASA_asmbl_36102: 37290-38391 , PASA_asmbl_36103: 38402-39465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003462_040 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_001369_010 0.0874079518 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
3 Hb_006750_010 0.1018085559 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
4 Hb_003006_090 0.1141164927 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
5 Hb_019516_060 0.1145425748 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
6 Hb_003226_250 0.1162290801 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
7 Hb_001195_660 0.1198727123 - - metalloendopeptidase, putative [Ricinus communis]
8 Hb_000056_190 0.1201640606 - - hypothetical protein [Ricinus communis]
9 Hb_002820_150 0.1211664469 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000117_030 0.1322901277 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
11 Hb_001789_100 0.136758431 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001677_040 0.1369898864 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
13 Hb_003929_240 0.1370935997 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
14 Hb_002542_060 0.1377435265 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
15 Hb_000820_110 0.1385881554 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
16 Hb_000271_220 0.1424593968 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
17 Hb_000193_210 0.1425551125 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
18 Hb_003086_030 0.143156566 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
19 Hb_009079_050 0.143417279 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
20 Hb_000246_130 0.1453920943 - - tubulin alpha chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_003462_040 Hb_003462_040 Hb_001369_010 Hb_001369_010 Hb_003462_040--Hb_001369_010 Hb_006750_010 Hb_006750_010 Hb_003462_040--Hb_006750_010 Hb_003006_090 Hb_003006_090 Hb_003462_040--Hb_003006_090 Hb_019516_060 Hb_019516_060 Hb_003462_040--Hb_019516_060 Hb_003226_250 Hb_003226_250 Hb_003462_040--Hb_003226_250 Hb_001195_660 Hb_001195_660 Hb_003462_040--Hb_001195_660 Hb_001369_010--Hb_003226_250 Hb_000808_150 Hb_000808_150 Hb_001369_010--Hb_000808_150 Hb_001369_010--Hb_001195_660 Hb_001369_010--Hb_006750_010 Hb_000749_020 Hb_000749_020 Hb_001369_010--Hb_000749_020 Hb_028396_020 Hb_028396_020 Hb_006750_010--Hb_028396_020 Hb_000820_110 Hb_000820_110 Hb_006750_010--Hb_000820_110 Hb_001195_380 Hb_001195_380 Hb_006750_010--Hb_001195_380 Hb_006750_010--Hb_019516_060 Hb_000271_220 Hb_000271_220 Hb_003006_090--Hb_000271_220 Hb_002542_060 Hb_002542_060 Hb_003006_090--Hb_002542_060 Hb_003006_090--Hb_001195_660 Hb_001677_040 Hb_001677_040 Hb_003006_090--Hb_001677_040 Hb_000603_020 Hb_000603_020 Hb_003006_090--Hb_000603_020 Hb_000246_130 Hb_000246_130 Hb_019516_060--Hb_000246_130 Hb_000030_130 Hb_000030_130 Hb_019516_060--Hb_000030_130 Hb_019516_060--Hb_000820_110 Hb_012395_110 Hb_012395_110 Hb_019516_060--Hb_012395_110 Hb_003226_250--Hb_000808_150 Hb_011310_040 Hb_011310_040 Hb_003226_250--Hb_011310_040 Hb_002759_220 Hb_002759_220 Hb_003226_250--Hb_002759_220 Hb_002596_080 Hb_002596_080 Hb_003226_250--Hb_002596_080 Hb_003847_040 Hb_003847_040 Hb_001195_660--Hb_003847_040 Hb_026549_070 Hb_026549_070 Hb_001195_660--Hb_026549_070 Hb_000283_140 Hb_000283_140 Hb_001195_660--Hb_000283_140 Hb_009079_050 Hb_009079_050 Hb_001195_660--Hb_009079_050 Hb_003582_090 Hb_003582_090 Hb_001195_660--Hb_003582_090 Hb_000139_300 Hb_000139_300 Hb_001195_660--Hb_000139_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.927492 2.96175 5.87622 15.9082 1.35624 0.544943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.12935 0.638561 0.986803 1.06553 12.7181

CAGE analysis