Hb_000283_140

Information

Type -
Description -
Location Contig283: 127619-130802
Sequence    

Annotation

kegg
ID fve:101298484
description transcriptional corepressor LEUNIG-like
nr
ID XP_012089280.1
description PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FUY2
description Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2
trembl
ID A0A067JUL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23508 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29606: 127642-130783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000283_140 0.0 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
2 Hb_012807_150 0.0712624636 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
3 Hb_004943_040 0.0727126501 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
4 Hb_000638_060 0.0885884704 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
5 Hb_000570_020 0.0895955439 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
6 Hb_000928_120 0.0908861901 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
7 Hb_000271_220 0.0941060392 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
8 Hb_001195_660 0.1018937679 - - metalloendopeptidase, putative [Ricinus communis]
9 Hb_006120_060 0.1019818865 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
10 Hb_000422_080 0.1022432878 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
11 Hb_007101_260 0.102574527 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
12 Hb_003001_130 0.1042199084 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000603_020 0.104443955 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
14 Hb_000622_330 0.1072685934 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
15 Hb_000327_360 0.1084848126 - - unnamed protein product [Coffea canephora]
16 Hb_000941_120 0.1086223735 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
17 Hb_000357_070 0.1091193663 - - -
18 Hb_010050_020 0.1102076363 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
19 Hb_028639_030 0.1106836124 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
20 Hb_000227_280 0.1134699808 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]

Gene co-expression network

sample Hb_000283_140 Hb_000283_140 Hb_012807_150 Hb_012807_150 Hb_000283_140--Hb_012807_150 Hb_004943_040 Hb_004943_040 Hb_000283_140--Hb_004943_040 Hb_000638_060 Hb_000638_060 Hb_000283_140--Hb_000638_060 Hb_000570_020 Hb_000570_020 Hb_000283_140--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_000283_140--Hb_000928_120 Hb_000271_220 Hb_000271_220 Hb_000283_140--Hb_000271_220 Hb_012807_150--Hb_000271_220 Hb_006120_060 Hb_006120_060 Hb_012807_150--Hb_006120_060 Hb_000603_020 Hb_000603_020 Hb_012807_150--Hb_000603_020 Hb_000327_360 Hb_000327_360 Hb_012807_150--Hb_000327_360 Hb_012807_150--Hb_000638_060 Hb_004943_040--Hb_000570_020 Hb_001865_100 Hb_001865_100 Hb_004943_040--Hb_001865_100 Hb_000422_080 Hb_000422_080 Hb_004943_040--Hb_000422_080 Hb_000157_140 Hb_000157_140 Hb_004943_040--Hb_000157_140 Hb_002805_090 Hb_002805_090 Hb_004943_040--Hb_002805_090 Hb_003847_040 Hb_003847_040 Hb_000638_060--Hb_003847_040 Hb_002217_320 Hb_002217_320 Hb_000638_060--Hb_002217_320 Hb_000638_060--Hb_000570_020 Hb_000638_060--Hb_006120_060 Hb_116349_120 Hb_116349_120 Hb_000570_020--Hb_116349_120 Hb_007537_030 Hb_007537_030 Hb_000570_020--Hb_007537_030 Hb_000375_300 Hb_000375_300 Hb_000570_020--Hb_000375_300 Hb_028639_030 Hb_028639_030 Hb_000570_020--Hb_028639_030 Hb_004522_030 Hb_004522_030 Hb_000928_120--Hb_004522_030 Hb_003001_130 Hb_003001_130 Hb_000928_120--Hb_003001_130 Hb_000622_330 Hb_000622_330 Hb_000928_120--Hb_000622_330 Hb_000928_120--Hb_000570_020 Hb_000928_120--Hb_007537_030 Hb_000271_220--Hb_000603_020 Hb_000349_200 Hb_000349_200 Hb_000271_220--Hb_000349_200 Hb_003006_090 Hb_003006_090 Hb_000271_220--Hb_003006_090 Hb_000271_220--Hb_003001_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.879 15.3941 24.3915 40.9523 3.04173 4.58671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15869 3.4352 5.49434 10.9004 28.3474

CAGE analysis