Hb_012807_150

Information

Type -
Description -
Location Contig12807: 156548-159947
Sequence    

Annotation

kegg
ID tcc:TCM_042148
description Alpha-L-fucosidase 1
nr
ID XP_012064719.1
description PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
swissprot
ID Q7XUR3
description Putative alpha-L-fucosidase 1 OS=Oryza sativa subsp. japonica GN=Os04g0560400 PE=3 SV=2
trembl
ID A0A067LIC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05451 PE=4 SV=1
Gene Ontology
ID GO:0016798
description alpha-l-fucosidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08686: 156610-159930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012807_150 0.0 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
2 Hb_000283_140 0.0712624636 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
3 Hb_000271_220 0.0750499481 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
4 Hb_006120_060 0.0851837312 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
5 Hb_000603_020 0.0904816424 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
6 Hb_000327_360 0.0930095235 - - unnamed protein product [Coffea canephora]
7 Hb_000638_060 0.1007394068 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
8 Hb_003680_030 0.102774228 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
9 Hb_001847_050 0.1052579832 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
10 Hb_001195_660 0.1066982009 - - metalloendopeptidase, putative [Ricinus communis]
11 Hb_000357_070 0.1104525081 - - -
12 Hb_010050_020 0.1140134195 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
13 Hb_002217_320 0.1169895982 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
14 Hb_006570_090 0.1174940599 - - tubulin beta chain, putative [Ricinus communis]
15 Hb_005074_040 0.1177776973 - - ATP binding protein, putative [Ricinus communis]
16 Hb_002488_010 0.1184136266 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
17 Hb_006351_020 0.1186473333 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
18 Hb_006829_070 0.1200068025 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
19 Hb_000959_300 0.1205376648 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
20 Hb_007101_260 0.1205449304 - - altered response to gravity (arg1), plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_012807_150 Hb_012807_150 Hb_000283_140 Hb_000283_140 Hb_012807_150--Hb_000283_140 Hb_000271_220 Hb_000271_220 Hb_012807_150--Hb_000271_220 Hb_006120_060 Hb_006120_060 Hb_012807_150--Hb_006120_060 Hb_000603_020 Hb_000603_020 Hb_012807_150--Hb_000603_020 Hb_000327_360 Hb_000327_360 Hb_012807_150--Hb_000327_360 Hb_000638_060 Hb_000638_060 Hb_012807_150--Hb_000638_060 Hb_004943_040 Hb_004943_040 Hb_000283_140--Hb_004943_040 Hb_000283_140--Hb_000638_060 Hb_000570_020 Hb_000570_020 Hb_000283_140--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_000283_140--Hb_000928_120 Hb_000283_140--Hb_000271_220 Hb_000271_220--Hb_000603_020 Hb_000349_200 Hb_000349_200 Hb_000271_220--Hb_000349_200 Hb_003006_090 Hb_003006_090 Hb_000271_220--Hb_003006_090 Hb_003001_130 Hb_003001_130 Hb_000271_220--Hb_003001_130 Hb_000622_330 Hb_000622_330 Hb_006120_060--Hb_000622_330 Hb_000689_050 Hb_000689_050 Hb_006120_060--Hb_000689_050 Hb_006120_060--Hb_000638_060 Hb_006120_060--Hb_000283_140 Hb_010050_020 Hb_010050_020 Hb_006120_060--Hb_010050_020 Hb_000603_020--Hb_003001_130 Hb_000603_020--Hb_000283_140 Hb_000320_350 Hb_000320_350 Hb_000603_020--Hb_000320_350 Hb_000424_030 Hb_000424_030 Hb_000603_020--Hb_000424_030 Hb_007101_260 Hb_007101_260 Hb_000327_360--Hb_007101_260 Hb_005074_040 Hb_005074_040 Hb_000327_360--Hb_005074_040 Hb_000327_360--Hb_006120_060 Hb_000327_360--Hb_000283_140 Hb_000808_150 Hb_000808_150 Hb_000327_360--Hb_000808_150 Hb_003847_040 Hb_003847_040 Hb_000638_060--Hb_003847_040 Hb_002217_320 Hb_002217_320 Hb_000638_060--Hb_002217_320 Hb_000638_060--Hb_000570_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.91189 7.21762 16.7669 29.4603 2.07714 3.0488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87967 1.63027 2.55302 5.79456 16.9312

CAGE analysis