Hb_002217_320

Information

Type -
Description -
Location Contig2217: 292878-296581
Sequence    

Annotation

kegg
ID cit:102609242
description CAS1 domain-containing protein 1-like
nr
ID XP_012084124.1
description PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
swissprot
ID P0CM56
description Probable O-acetyltransferase CAS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CAS1 PE=3 SV=1
trembl
ID A0A067K6Q8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19035 PE=4 SV=1
Gene Ontology
ID GO:0005783
description cas1 domain-containing protein 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22932: 292034-296491 , PASA_asmbl_22933: 292039-293512 , PASA_asmbl_22934: 292039-293597 , PASA_asmbl_22935: 294570-294678
cDNA
(Sanger)
(ID:Location)		 045_F16.ab1: 295147-296491

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_320 0.0 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
2 Hb_012762_060 0.0863131044 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
3 Hb_000638_060 0.0887321269 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
4 Hb_001847_050 0.0947631035 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
5 Hb_003964_080 0.1004352484 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
6 Hb_003680_030 0.1026400497 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
7 Hb_006829_070 0.1043445375 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
8 Hb_000134_120 0.1088468622 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
9 Hb_005357_110 0.1118009854 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
10 Hb_000138_060 0.115184447 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
11 Hb_012807_150 0.1169895982 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
12 Hb_000915_130 0.1175686117 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
13 Hb_003209_130 0.1183386944 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
14 Hb_005511_130 0.1201155035 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
15 Hb_006925_050 0.1203402039 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
16 Hb_007919_110 0.1209549749 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
17 Hb_000260_490 0.1226152531 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
18 Hb_001754_020 0.1226631211 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
19 Hb_000342_170 0.1227270664 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
20 Hb_000424_030 0.1240317814 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002217_320 Hb_002217_320 Hb_012762_060 Hb_012762_060 Hb_002217_320--Hb_012762_060 Hb_000638_060 Hb_000638_060 Hb_002217_320--Hb_000638_060 Hb_001847_050 Hb_001847_050 Hb_002217_320--Hb_001847_050 Hb_003964_080 Hb_003964_080 Hb_002217_320--Hb_003964_080 Hb_003680_030 Hb_003680_030 Hb_002217_320--Hb_003680_030 Hb_006829_070 Hb_006829_070 Hb_002217_320--Hb_006829_070 Hb_012762_060--Hb_003680_030 Hb_012762_060--Hb_006829_070 Hb_002488_010 Hb_002488_010 Hb_012762_060--Hb_002488_010 Hb_002026_020 Hb_002026_020 Hb_012762_060--Hb_002026_020 Hb_000134_120 Hb_000134_120 Hb_012762_060--Hb_000134_120 Hb_003847_040 Hb_003847_040 Hb_000638_060--Hb_003847_040 Hb_000283_140 Hb_000283_140 Hb_000638_060--Hb_000283_140 Hb_000570_020 Hb_000570_020 Hb_000638_060--Hb_000570_020 Hb_012807_150 Hb_012807_150 Hb_000638_060--Hb_012807_150 Hb_006120_060 Hb_006120_060 Hb_000638_060--Hb_006120_060 Hb_001847_050--Hb_012807_150 Hb_001195_130 Hb_001195_130 Hb_001847_050--Hb_001195_130 Hb_006925_050 Hb_006925_050 Hb_001847_050--Hb_006925_050 Hb_004730_020 Hb_004730_020 Hb_001847_050--Hb_004730_020 Hb_000342_170 Hb_000342_170 Hb_001847_050--Hb_000342_170 Hb_000753_160 Hb_000753_160 Hb_003964_080--Hb_000753_160 Hb_003964_080--Hb_000134_120 Hb_007919_110 Hb_007919_110 Hb_003964_080--Hb_007919_110 Hb_005511_130 Hb_005511_130 Hb_003964_080--Hb_005511_130 Hb_002374_270 Hb_002374_270 Hb_003964_080--Hb_002374_270 Hb_003680_030--Hb_012807_150 Hb_003680_030--Hb_006829_070 Hb_003680_030--Hb_002488_010 Hb_000959_300 Hb_000959_300 Hb_003680_030--Hb_000959_300 Hb_006829_070--Hb_002026_020 Hb_000424_030 Hb_000424_030 Hb_006829_070--Hb_000424_030 Hb_006829_070--Hb_006925_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.84374 24.2422 33.5615 62.9736 9.63315 7.47309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.66461 6.48124 7.73896 10.4512 27.2436

CAGE analysis